<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32871

Description Uncharacterized protein
SequenceIHNMVAVLEVISSLEKYPITKEALEETRLGRLINEVRKKTSNEELAKRAKKLLRNWQKLIEPVTQNEPVPRGLPNPPGSANGGAHNCKPEAPLPAVAGSKPISELKSRNDIQKLNSPKPEKLGNRKRKGEHRDGHQGPPPPKVSKASHEVLQNSSPPPTNGIGGSPENFPSPVDVNLHAGPESSRTELSENDKHNKIPVNAVKPHTSSPGLVKPSSTSSLLKTAVLQQHDKSEETTGPHQPKSPRCSSFSPRNVRHDTFARQHTTYSPKDSMPSPSQRSQFLDTAQVPSPPPSLMQPSTPPMPAKRLEFPQQSVTEVSQHWQEQQVPSESQHRHTAGTLQQHTSPSCKTSSHPGESLTPHMGFSQDTSKMDSDDAASGSDSKKKKRYRPRDYTVNLDGHVTEGGVKPVRLKERKLTFDPMTGQIKPLTQKDPLQVEIPALTEQHRTETEKQEQKPNLQSPFEQTNWKELSRNEIIQSYLNRQSSLLSSSGVQTPGAHYFMSEYLKQEESTRKEARKTHVLAPNSKPTDLPGVTREVTSDDLDRIREHNWPGVNGCYDTQGNWYDWTQCISLDPHGDDGRLNILPYVCLD
Length589
PositionUnknown
OrganismAnas platyrhynchos platyrhynchos (Northern mallard)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Galloanserae> Anseriformes> Anatidae> Anatinae> Anas.
Aromaticity0.04
Grand average of hydropathy-1.036
Instability index62.30
Isoelectric point8.93
Molecular weight65568.41
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32871
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.07|      12|      15|     339|     350|       1
---------------------------------------------------------------------------
  339-  350 (23.47/ 9.96)	LQQHTSPSCKTS
  357-  368 (20.60/ 7.83)	LTPHMGFSQDTS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     352.44|      74|     149|      85|     158|       2
---------------------------------------------------------------------------
   34-   77 (48.44/15.10)	........................N...EV...RKKT.S..NEELAKRAKKL.LRNWQKLI.EP..VT..Q..NEPVPRGLPnP.P
   85-  158 (132.09/52.86)	HNCKPEAPLPAVAGSKPISELKSRN...DI...QKLN.SPKPEKLGNRKRKGEHRDGHQGP.PPPKVS..KASHEVLQNSSP.P.P
  160-  219 (77.52/28.23)	.........NGIGGS.P.ENFPSPV...DV....NLH.A.GPE..SSRTELSEN.DKHNKI.PVNAVKphTSSPGLVKPSST.S.S
  229-  303 (94.39/35.84)	HDKSEETTGPHQPKSPRCSSFSPRNvrhDTfarQHTTySPK.DSMPSPSQRSQFLDTAQVPsPPPSL.........MQPSTP.PmP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.54|      18|      18|     406|     423|       3
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  406-  423 (31.37/16.52)	KPVRLKER.KLTFDPMTGQ
  425-  443 (26.16/12.72)	KPLTQKDPlQVEIPALTEQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32871 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RNWQKLIEPVTQNEPVPRGLPNPPGSANGGAHNCKPEAPLPAVAGSKPISELKSRNDIQKLNSPKPEKLGNRKRKGEHRDGHQGPPPPKVSKASHEVLQNSSPPPTNGIGGSPENFPSPVDVNLHAGPESSRTELSENDKHNKIPVNAVKPHTSSPGLVKPSSTSSLLKTAVLQQHDKSEETTGPHQPKSPRCSSFSPRNVRHDTFARQHTTYSPKDSMPSPSQRSQFLDTAQVPSPPPSLMQPSTPPMPAKRLEFPQQSVTEVSQHWQEQQVPSESQHRHTAGTLQQHTSPSCKTSSHPGESLTPHMGFSQDTSKMDSDDAASGSDSKKKKRYRPRDYTVNLDGHVTEGGVKPVRLKERKLTFDPMTGQIKPLTQKDPLQVEIPALTEQHRTETEKQEQKPNLQSPFEQTNW
2) TRKEARKTHVLAPNSKPTDLPGVTREVTSDDLDRI
54
510
466
544










Molecular Recognition Features






MoRF SequenceStartStop




NANANA