<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32858

Description Uncharacterized protein
SequenceMSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREKLAQQQASAAAAAAATAATAGATTTAVSQQNTPKNGEATVNGEENGAHAINNHSKPMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNSGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLSCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPGTSNPNSNIMLASASFDSTVRLWDVDRGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGTLVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length523
PositionTail
OrganismAnas platyrhynchos platyrhynchos (Northern mallard)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Galloanserae> Anseriformes> Anatidae> Anatinae> Anas.
Aromaticity0.07
Grand average of hydropathy-0.294
Instability index36.55
Isoelectric point5.40
Molecular weight56585.36
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32858
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     382.97|      40|      40|     331|     370|       1
---------------------------------------------------------------------------
  174-  207 (39.94/16.43)	..LRGHESEVFICAWNPVS.........dlL.A.SGS.GDSTARIWNL.......
  232-  268 (45.93/19.80)	PS....NKDVTSLDWNSDG.........tlL.A.TGS.YDGFARI.WT.EDGNLA
  269-  310 (47.72/20.81)	STLGQHKGPIFALKWNKKG..........nY.IlSAG.VDKTTIIWDA.HTGEAK
  311-  351 (55.76/25.33)	QQFPFHSAPALDVDWQNN..........ttF.A.SCS.TDMCIHVCRL.SCDRPV
  352-  393 (61.54/28.58)	KTFQGHTNEVNAIKWDPSG.........mlL.A.SCS.DDMTLKIWSM.KQDTCV
  394-  442 (46.04/19.86)	HDLQAHSKEIYTIKWSPTGpgtsnpnsnimL.A.SAS.FDSTV...RLwDVDRGV
  445-  486 (59.53/27.44)	HTLTKHQEPVYSVAFSPDG..........kYlA.SGS.FDKCVHIWNT.QSGTLV
  487-  518 (26.50/ 8.89)	HSYRG.TGGIFEVCWNARG........dkvG.A.SASdGSVCV............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.62|      22|      22|     127|     148|       2
---------------------------------------------------------------------------
  105-  123 (19.05/ 9.79)	...QQQASAAAAAAATAATAGA
  127-  148 (35.01/24.36)	AVSQQNTPKNGEATVNGEENGA
  150-  171 (34.55/23.94)	AINNHSKPMEIDGDVEIPPNKA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32858 with Med16 domain of Kingdom Metazoa
Unable to open file!