Description | Transcription elongation factor A1 |
Sequence | MSDAAGDEIIRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTDKDSEEKKKESASSSQNSPEAREESSSSSNSSSRKEEGSASSNSFIRSFPRAPSTSDSVRMKCREMLSAALRTGDDYIAIGADEEELGSQIEEAKAPIFQEFKNTDMKYKNRVRSRIANLKDAKNPNLRKNVLCGNIPPDKLAKMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC |
Length | 309 |
Position | Unknown |
Organism | Anas platyrhynchos platyrhynchos (Northern mallard) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Archelosauria> Archosauria> Dinosauria> Saurischia> Theropoda> Coelurosauria> Aves> Neognathae> Galloanserae> Anseriformes> Anatidae> Anatinae> Anas. |
Aromaticity | 0.04 |
Grand average of hydropathy | -0.816 |
Instability index | 53.95 |
Isoelectric point | 8.95 |
Molecular weight | 34406.73 |
Publications |
Annotated function |
|
GO - Cellular Component | nucleolus GO:0005730 IEA:Ensembl transcription factor TFIID complex GO:0005669 IEA:Ensembl |
GO - Biological Function | nucleic acid binding GO:0003676 IEA:InterPro zinc ion binding GO:0008270 IEA:InterPro |
GO - Biological Process | regulation of transcription, DNA-templated GO:0006355 IEA:InterPro transcription, DNA-templated GO:0006351 IEA:InterPro |
Binary Interactions |
Repeats | >MDP32856 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 69.30| 24| 26| 90| 115| 1 --------------------------------------------------------------------------- 90- 115 (36.21/20.91) SEEKKKE.SASSS...QNSPeaREESSSSS 117- 144 (33.08/14.16) SSSRKEEgSASSNsfiRSFP..RAPSTSDS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 62.54| 18| 27| 213| 230| 2 --------------------------------------------------------------------------- 213- 230 (31.85/24.92) NLRKNVLCGNIPPDKLAK 243- 260 (30.68/23.74) EMRKNLTKEAIREHQMAK --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 53.45| 14| 27| 266| 279| 3 --------------------------------------------------------------------------- 266- 279 (28.18/14.80) TDLFTCGKC..KKKNC 294- 309 (25.27/12.72) TTFVVCNECgnRWKFC --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) IIRIAKKMDKMV 2) LIKSWKKLL | 9 73 | 20 81 |
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