<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32831

Description Uncharacterized protein
SequenceEDDDSDSEDDERLRRAAASNYGHNYDDDNEEEEEEEQDAAVPAEEDHHAKDDDPEAEELEALTNEIDEESQIVGEVIRIKELLLHKQDHSDATLFDSLRRLQLMQLSVSTLKATEIGRAVNGLRKHSSQQIRHLALALIQDWKILVDEWVSTTNVALADNSPGTSNPSVVDDDDEEEGLPSPPLDEGAFFAPETTAIQLSEFFDEMDEDGNLRHNNDARLGNKRENNGRRPVNHSTVSKPELTRPVGTVERDQFRRPELTRQEPPMRHTNQQKPQGSNLQAKPQGMLNKQSRPLSSDSGSMRPMKAATQQKPIGEMKYKQTQEHFGVERKPAMGHVDKSRLRAQPSSGVRLESARPKTQDGLESNVRLEVAKRRLQERYQEAENAKKQRTIQVMELGDIPKPKSNTRQPMVKSRNNIRSRVLGRR
Length425
PositionUnknown
OrganismTriticum urartu (Red wild einkorn) (Crithodium urartu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.03
Grand average of hydropathy-1.140
Instability index64.85
Isoelectric point5.23
Molecular weight48228.56
Publications
PubMed=23535596

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP32831
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.37|      20|      22|      27|      46|       1
---------------------------------------------------------------------------
   13-   36 (26.99/12.85)	LRRAAASNYGhnydDDNEEEEEEE
   37-   60 (27.38/13.13)	QDAAVPAEEDhhakDDDPEAEELE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.15|      16|      16|     262|     277|       2
---------------------------------------------------------------------------
  262-  277 (31.97/19.11)	QEP...PMRHTNQQ.KPQGS
  280-  296 (21.28/10.41)	QAK...PQGMLNKQsRPLSS
  297-  315 (20.90/10.11)	DSGsmrPMKAATQQ.KPIGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.24|      14|      16|     347|     360|       3
---------------------------------------------------------------------------
  347-  360 (24.80/15.15)	SGVRLESARPKTQD
  364-  377 (23.44/13.95)	SNVRLEVAKRRLQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.87|      13|      16|     232|     244|       4
---------------------------------------------------------------------------
  232-  244 (23.04/13.96)	VNHSTVSKPELTR
  249-  261 (23.83/14.67)	VERDQFRRPELTR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32831 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EDDDSDSEDDERLRRAAASNYGHNYDDDNEEEEEEEQDAAVPAEEDHHAKDDDPEAEELEALTNEID
2) SEFFDEMDEDGNLRHNNDARLGNKRENNGRRPVNHSTVSKPELTRPVGTVERDQFRRPELTRQEPPMRHTNQQKPQGSNLQAKPQGMLNKQSRPLSSDSGSMRPMKAATQQKPIGEMKYKQTQEHFGVERKPAMGHVDKSRLRAQPSSGVRLESARPKTQDGLESNVRLEVAKRRLQERYQEAENAKKQRTIQVMELGDIPKPKSNTRQPMVKSRNNIRSRVLGRR
3) VALADNSPGTSNPSVVDDDDEEEGLPSPPLDEGAFFA
1
200
155
67
425
191










Molecular Recognition Features






MoRF SequenceStartStop




1) EDDDSDSEDDERLRRAAASNYGHNYDDDNEEEEEEE
1
36