<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32824

Description Uncharacterized protein
SequencePAGGGDGGRWLAAAPPNLRAKVVQKITNNLCQFQVQGNQLDQLHAVASRYEAKVFDDSDNVQDYLRTISIKMMTLQSKWQPVAQAAAPDHQAHMGGQMQPQFQVQGNQLDQLRRVASRYEAKIQTQSMARHNSSGMRAQQPQRKSARMDQQDLRVYQCQSYQAHGGQQSNVGPLQIRPSGERNNQQFGHHPLEVDWREDMFQRITSLKHAHFSELVEFQRALRARASQLESLPKEEADKYQKVVDAMARIGDALSFLQLQKSNIPEAMRDQFDMRQTFVYGIVRWCREIKLRNAGKNTGRQLQLQNCRDPFSQKHQEQPAAETSFSQSSENVPARSPLIQQQENSHHLAGEETVDHEVCREAEAPVATNLTGSSTPPLTDGTGTCSQEKEEEHHPAYEAIPQLTQNANHVEPPPAQQQTNRPLSPAALRSLAQDMGVNLKRAFRRTMSGSCAWFDESSGESCNKRRKMHSLRNEITAAYSMLVETEIRITDGDTGGADGAVVIELCYVPVSLTPDLRAVIDPSEMTTKLLVPADYPRSSPVLLGDDGEHRKGIAAGVLDVEFRRALSQLPEPRSIKGIAQAWDTCVRRAVVQF
Length593
PositionTail
OrganismTriticum urartu (Red wild einkorn) (Crithodium urartu)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Triticinae> Triticum.
Aromaticity0.06
Grand average of hydropathy-0.701
Instability index58.07
Isoelectric point7.15
Molecular weight66322.60
Publications
PubMed=23535596

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32824
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     213.79|      62|      68|      32|      97|       1
---------------------------------------------------------------------------
   32-   97 (105.91/70.53)	QFQVQGNQLDQLHAVASRYEAKVFDDSDNVQDylrTISIKMMTLQSKWQPVAQA.....AAPDHQAHmGGQ
  101-  167 (107.88/60.73)	QFQVQGNQLDQLRRVASRYEAKIQTQSMARHN...SSGMRAQQPQRKSARMDQQdlrvyQCQSYQAH.GGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     221.11|      58|      73|     286|     344|       2
---------------------------------------------------------------------------
  225-  273 (42.62/20.22)	..............RAS.QLESLPKEEADKYQKV..VDAMArigdalSFLQlQKSNIP...EAMRDQFD
  286-  344 (97.35/59.00)	CREIKLRNAGKNTGRQL.QLQNCRDPFSQKHQEQ..PAAET......SFSQ.SSENVPaRSPLIQQQEN
  359-  420 (81.14/44.86)	CREAEAPVATNLTGSSTpPLTDGTGTCSQEKEEEhhPAYEA....ipQLTQ.NANHV..EPPPAQQQTN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32824 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EAKIQTQSMARHNSSGMRAQQPQRKSARMDQQ
2) NTGRQLQLQNCRDPFSQKHQEQPAAETSFSQSSENVPARSPLIQQQENSHHLAGEETVDHEVCREAEAPVATNLTGSSTPPLTDGTGTCSQEKEEEHHPAYEAIPQLTQNANHVEPPPAQQQTNRPLSPAALRSL
120
297
151
431










Molecular Recognition Features






MoRF SequenceStartStop




NANANA