<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32811

Description Uncharacterized protein
SequenceMSTPMEVSSTVSDVHNFIDSILRTEELEAIFTGYIVESSVNEECKIKNYEEQMTALIKSCDTPEKIELMLRDYLNGAGSIPNVNKVRLLLSIKYLLQAQTLLFTNFYYSLRSVCEAILNCEHLHINKQIFFCQSFELIHRVISQVDYKGVRDIIRFMIEKIHTIPIEANIAMLPQLDVMRKVLDYALNRNSSLLPAYLAFDEIKKKSDKWMHWKFADLFSAFVESFRPVAQMVSIINRSKLLPIVGYSSTLNQSWQLNAATAAFDLKGLLPYNNELTRPQIGLLRYVLEQPYSREMIYFMLSLTNKAKSRCPILEEQLVALIVLAMEKSENETNNQEDTDYSQTQCLWQILSGHLITFIILNHISFPQLVRSLHESLAARNSKKGRDHLMWMLLQYISGSIQKTPLTDFLPFFKLHDLLYPEKDPLPVPDITKPICTHTFAISSIWIHLLKKAENEPQKMIRPIPNCLRLHVEFLHQTFMSSDLPASLTVDSKIPLICNAYSTNSDYYNRILTILCDTIKCNSRSGSTGGNTNGAIIPLSVSLLDSVTLHTKMSLISNIVAQINKSSSKDGTIISPALAETYSRLLIYIELETLGIKNFIQQVIPNAIRTQSWGTLNILFEMFIHRLHHIPAPYRVQFLNQLHYLANSPHSNQIQLHSCMESTALKLITGFTSEQVLLITQLNRYQNEPKIRISHDSEELNKVLILTLARAIHVTGCDTLIEWCKELLSNIMNSTPLAWSSCTLKCFPPAITEYYQNFNTVTENKAQLKQSVEEEYRKWITMSNENDIIAHFSIQGTPPLFLCLLWKMILENDRINPIAYKILDRIGAKALSSHLRILVDYLVNEFTNLCGTQNVTKYIDKLNDLIWKSHVITLDRLLLCLTLRAYEGNEAQVSLFIIQMLLLKTTDFSNRVADFVREMSPEHWKQSNWHEKHHALHRKYPEKFYFEGLADISGQNMQHSYLPTYFSNICLRFIPVLDLIIHRYLELPPGSPSPLIDSLLEKYGCLYKFHDRPLTYLYETLHYYEHKMRERPALRRKLVSIIIGAFKDIKPANWAVTDAYLNYMKRPVEDLAWNPELDYYFKLISRVVDTFQGKSPFPHVDWRFNEFANAGVHALHITCIELMALPVAANVVANNLIDLVVVGHKYIPRNTIEFWNNAIGVVLTALPEAYWSVINDRIISMMESPLLTYSPHPEPFQMMNFSDSHKSMSEMQPSYLIALIHSFFHHASIGQITPIPQFLRERVKPIIKTEEQFLFIVHIVCPFLQRLYAERTRRAMEVTIELYSFLEVIDKNCTELRFMDTITDLLYHMKYHITGDSIKNDVEGKIRNLRPALQKRLRFITHLNIETTT
Length1349
PositionTail
OrganismTetranychus urticae (Two-spotted spider mite)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Chelicerata> Arachnida> Acari> Acariformes> Trombidiformes> Prostigmata> Eleutherengona> Raphignathae> Tetranychoidea> Tetranychidae> Tetranychus.
Aromaticity0.10
Grand average of hydropathy-0.064
Instability index48.38
Isoelectric point7.07
Molecular weight155986.27
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32811
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.94|      23|     109|     647|     669|       1
---------------------------------------------------------------------------
  647-  669 (40.02/21.60)	NSPHSNQIQLHSCMESTALKLIT
  730-  748 (33.77/17.23)	NIMNSTPLAWSSC....TLKCFP
  759-  781 (36.15/18.89)	NTVTENKAQLKQSVEEEYRKWIT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     455.62|     150|     549|     346|     523|       2
---------------------------------------------------------------------------
  346-  505 (244.64/168.44)	CLWQilsGHLITF..........................IILNHISFPQLVRSLHESLAARNSKKGRDH.............LMWMLLQYISG.SIQKTpltdFLP.FFKL.............HDLL.YPEKDPLPVPD..ITKPICTHTFAISSIwIHLLKKAENEPQKMiRPIPNCLRLHVEFLHQTFMSSDlPASLTV.DS.....KIPLICNAYSTNS
  865- 1077 (210.99/140.73)	LIWK...SHVITLdrlllcltlrayegneaqvslfiiqmLLLKTTDFSNRVADFVREMSPEHWKQSNWHekhhalhrkypekFYFEGLADISGqNMQHS....YLPtYFSNiclrfipvldliiHRYLeLPPGSPSPLIDslLEKYGCLYKFHDRPL.TYLYETLHYYEHKM.RERPALRRKLVSIIIGAFKDIK.PANWAVtDAylnymKRPVEDLAWNPEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     183.70|      54|     549|      42|      95|       3
---------------------------------------------------------------------------
   42-   95 (91.09/57.16)	EECKIKNYEEQMTALIKSCDTPEKIELMLRDYLNGAGSIPNVNKVRLLLSIKYL
  592-  645 (92.61/58.24)	ETLGIKNFIQQVIPNAIRTQSWGTLNILFEMFIHRLHHIPAPYRVQFLNQLHYL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.98|      18|     550|     506|     523|       4
---------------------------------------------------------------------------
  506-  523 (33.91/28.35)	DYYNRILTILCDTIKCNS
 1078- 1095 (32.07/26.30)	DYYFKLISRVVDTFQGKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.63|      17|     102|     174|     190|       6
---------------------------------------------------------------------------
  174-  190 (29.95/19.15)	PQLDVMRKVLDYALNRN
  279-  295 (30.68/19.80)	PQIGLLRYVLEQPYSRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.45|      10|     258|     839|     848|       7
---------------------------------------------------------------------------
  839-  848 (19.22/12.23)	VDYLVNEFTN
 1100- 1109 (21.22/14.31)	VDWRFNEFAN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32811 with Med23 domain of Kingdom Metazoa
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