<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32802

Description Uncharacterized protein
SequenceMIGGPIIPPMDIGANLVSTSKTSNIKSLLLEAWRQRWSPIDWAVNIKRVLPRGVSGDVYDLSNCIIIQALIGPAPNPLFISYLNHCISAHVVSYGAVLSSISKYQEFSKSKCIICLLDLCNDLKKRVNCYGNEEECISLCKAIIALAHWLFSCLYHALNKITELKSVTSNQNTNQFGNLGHHHGSSYAALSGSLGASGNSSVSGTNSQLNEFISITEKSCDILSFISSSSFIKSLFHVGKMEDQSGYSQLVSKVDAVESLLSSGPSSCFPPTLTNAKELSDVIVNFLSTTEWNNRDPTVLATEILTNRELAKGPIIHCSSPLDLFAQSCNTIIAINAILYPTNEIEALARQISLAAKFNDIPYPEVCCEIVRSCFIELVDSSSTERSINLREDEKVGEDLKWAAFTFLKVPHIFAKLDFPKMDKKTISSDLEAGFDKLLMYTPLLDLTDSRSNCDCLDLFLKELCQSEFTIEQKNAIMARRHKDSPKIKDKIIEPAPGSGGQGASLILRAEPTVTSILKTLDSDYSKNQDGLLGVLNHMVPGKSFELILNAAAATGKLKSFSIKLVKFNEFNKQINGEGGKQSQTRALLFDITFLMLCHIAQNYGTDFITQNAETKDSFFATWCAQSLPEGGKYRSSDALLLNCDPLKVDNLLSQFTSPDFELKTSLVKWHEVCLNAPAAIKEVLLAWEHGVITAENVKTIFDNVKSKMCCLPVVISAWLSAYITTLPHEERIKPMNMIQQFMTPASFSETTPLSGNGNNGNNGNNTPGSEGNSNNEPTNTYYKERSMLMSNIIKKMFWDLHPTSQTKSNGVLSTVSHGLTTETVLWKLLEDIFMNAHNRSWLDQRDVYNIDTIFCVGGPNWFVEALLRLLVKFDHASELNKAVGLIYGLFHMDIEQCALSLLVNGLVGYILNENKQNALTEPKASALAKLTVMTVLAALAEAEERRSTDSKTSLKRHGYQRDVSMDFVPMEVDANKVNSVNNTNERPNKMRRTETTKSLNIIIEDTPFFYTMNQQPIDPRILNEPLTKAIADLLRLLSTIIADSVVSQRTLFPLIFLEQLIICGKQDAHKIIQFLPFQAINRLIKMMPGSLSYEFLLSISNLQTSKARKIVARALCQLKTAKVDIPRFSS
Length1131
PositionTail
OrganismTetranychus urticae (Two-spotted spider mite)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Chelicerata> Arachnida> Acari> Acariformes> Trombidiformes> Prostigmata> Eleutherengona> Raphignathae> Tetranychoidea> Tetranychidae> Tetranychus.
Aromaticity0.08
Grand average of hydropathy-0.075
Instability index42.44
Isoelectric point6.48
Molecular weight125494.88
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32802
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.25|      14|      47|      62|      88|       1
---------------------------------------------------------------------------
   62-   78 (17.53/11.05)	SNCIIiqALIGPApNPL
  110-  123 (27.72/19.37)	SKCII..CLLDLC.NDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.66|      11|      47|     261|     271|       2
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  261-  271 (22.72/13.26)	LSSGPS.SCFPP
  310-  321 (16.93/ 7.79)	LAKGPIiHCSSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.78|      26|     305|     611|     638|       3
---------------------------------------------------------------------------
  554-  586 (35.93/15.23)	ATGKlKSFsiklvkFNEFNKQINGEGGKQSQTR
  613-  638 (48.85/31.16)	AETK.DSF......FATWCAQSLPEGGKYRSSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     140.60|      42|     186|     453|     498|       5
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  405-  450 (26.28/11.80)	................FTFLKVPHIFAK..LDFPKMDkktissdleagfDKLLMYTPlldltdS
  453-  498 (66.87/56.18)	NCDCLDLFLKelcqSEFTIEQKNAIMARRHKDSPKIK............DKIIEPAP......G
  500-  533 (47.44/29.86)	GGQGASLILR....AEPTV...TSILKTLDSDYSKNQ............DGLL...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     154.37|      50|     185|     674|     724|       8
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  674-  724 (80.43/62.66)	CLNAP....AAIKEVLLAWEHGVITAENVKTIFD..NVKSKMCCLPVVISAwLSAYI
  856-  911 (73.95/50.98)	CVGGPnwfvEALLRLLVKFDHASELNKAVGLIYGlfHMDIEQCALSLLVNG.LVGYI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32802 with Med24 domain of Kingdom Metazoa
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