<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32794

Description Uncharacterized protein
SequenceMTHPNITNGASLEDCYTNFFALADLCGIKWKRLITPETWLPSATGDPLDDPVLKSFSKCLAAELLCVWRRVANNKSYSKELWIFWYGEEPDVSKLSPNELIEAEQGSWENGLSYECRTLLFKAFHNLIERCLLSRGFARIGKWFLQPFESDIPPDEGSSSSQLSFAFNFFVHGESTVCASVDVRVLPPVFRLARRNLLAAQGSSCGLNVILSPYGVAGIVTGQTFKDSDQSVQRLLQEWEKFYPLNLQSSKSGQSINGNNSNGSSSNNRQAPINVTPPFYVDCYDDVSVGVINDPISSASSLSLPSVVEVSVAGIKMKYPSSYIYIVPENYAKKTDDNSVKSTSRDAKFSQQQQSQQTQQPTPKPTQSQQQQTQQQTSNPTVNLLTPPNTPPELHQSYLAINTNRVRSQILSPIQPQIPSSTCRIRNNAFQEMNMSHQSSKPVEQNSTSSSTIAASSSPTTSPSSLSTTTATVTISTASTTASSPSISSANPTSTPNSNLGVTGVSGTSTPTPISSLTSSSTTIPTSATTTNTSNGITVGGSSATTTLVSGKGTIRISKFSFHLNFLICFNY
Length572
PositionMiddle
OrganismTetranychus urticae (Two-spotted spider mite)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Chelicerata> Arachnida> Acari> Acariformes> Trombidiformes> Prostigmata> Eleutherengona> Raphignathae> Tetranychoidea> Tetranychidae> Tetranychus.
Aromaticity0.08
Grand average of hydropathy-0.340
Instability index50.99
Isoelectric point7.50
Molecular weight61975.36
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32794
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      79.11|      13|      17|     350|     362|       1
---------------------------------------------------------------------------
  350-  362 (24.37/13.78)	SQQQQS.QQTQQPT
  368-  381 (19.15/ 9.08)	SQQQQTqQQTSNPT
  395-  407 (15.96/ 6.21)	HQSYLA.INTNRVR
  408-  420 (19.64/ 9.52)	SQILSP.IQPQIPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.00|      20|      20|     442|     461|       2
---------------------------------------------------------------------------
  442-  461 (31.99/11.46)	PVEQNSTSSSTIAASSSPTT
  462-  481 (25.02/ 7.56)	SPSSLSTTTATVTISTASTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.34|      11|      20|      54|      68|       3
---------------------------------------------------------------------------
   54-   68 (17.09/23.82)	KSFSKclaaELLCVW
   75-   85 (24.26/17.50)	KSYSK....ELWIFW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      92.84|      21|      22|     272|     292|       4
---------------------------------------------------------------------------
  272-  292 (38.72/26.98)	PINVTPPFYVDCYDDVSVGVI
  295-  315 (29.73/18.87)	PISSASSLSLPSVVEVSVAGI
  323-  340 (24.40/14.06)	YIYIVPENYAKKTDDNSV...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      27.96|       9|      24|     223|     232|       5
---------------------------------------------------------------------------
  223-  232 (12.01/11.16)	QTFKdSDQSV
  248-  256 (15.94/ 8.68)	QSSK.SGQSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.26|      28|      32|     492|     523|       7
---------------------------------------------------------------------------
  483-  519 (35.65/18.77)	SSPSissanPTS..TPNSNLGVTgVSGTSTPTpisSLTS
  520-  550 (40.61/12.97)	SSTT....iPTSatTTNTSNGIT.VGGSSATT...TLVS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32794 with Med13 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KTDDNSVKSTSRDAKFSQQQQSQQTQQPTPKPTQSQQQQTQQQTSNPTVNLLTPPNTPPELHQSYLAINTNRVRSQILSPIQPQIPSSTCRIRNNAFQEMNMSHQSSKPVEQNSTSSSTIAASSSPTTSPSSLSTTTATVTISTASTTASSPSISSANPTSTPNSNLGVTGVSGTSTPTPISSLTSSSTTIPTSATTTNTSNGITVGGSS
334
543










Molecular Recognition Features






MoRF SequenceStartStop




NANANA