<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32792

Description Uncharacterized protein
SequenceMVLNDRSNVEVVFVVEGTANLSLYAESIKSSYIIPTLEILSGGPPDENDYEFENTLNCSLFALVVFMTADSAPDPASFCFGPTSSTHKLLQWFDRIQFNCGGASSCSHITEGIATSLQCFDEFKTMRENASPGSSHNKIPKHCVLICNSPPYALPAAESISYNGLMIDHLVGIMGDRGISLSLFSPRKMPFLFKLYEKAGGDLNSALAKNYAKDRRHLVLLKNFQLQERPISPQANQSSNKSLEKASSSPSPSNQGQKRPLSPASSAVYSKDSVQITIHQQQPQQQLQQQQQVQQNQLQQQQQQQQQQQQQQQQQQQQQQQQQQQQHIRGPPPPPPTFIQSDKTSTPDSIAPLRPIPNTMPVLTSQLSSIRQGAPNVVSQQSGPPGQSNQTRMGFPGTQIRSVQRENYNPVMMQGQLRGASSPFSAPPPSPMNRASVPSPLSQNAPSPMPVPPGGMMNQDSNVSSQQMPMPNSMMKDKKIIWNGTIEFQEKSAQEGIPPKYSLPCSITSTNGSPDLEKNAEKWPSMLNLSLLPRTIINAVLPVLKNESHVVVLNFANQDTSEIIQKLQKTISGGGRQPQIQFCGCINLYPNQNTMMIVIYAPDKNTFMGFLPMNQEAFMHKIQAAYKNARTAKILQGNQQQISQQPNQQSPQTNIGQPMMGQSIGQAMGQQPQPQMIQQIGPVVQQSGPGQMTPMQGQSQQNQQHLQPQPQLGQQVGFRNQSVQGIRNNAGPNNHGMMNQGLIPNQMIASGGQRPQQTNVLLNQALGPIQGTGGHPQFAQQNQIIGGQQQTTATLVTQSGPPMHQQPQPQPMQQQPQQQQIHFNSQNQSNSQPPPPQQPQQHSTHDVRNRNLLNIQQLQKQLEACKQTELEFAQQHVDHTIPSGHTFFDQSTGMHYSKSSSGDLGTNFRNISASPRTGPDPETDLNLSKGHLLRPEEMAFPQTGGNLQGKPPDNAQAHPQHQQPLVRQQLQQHIHQQQQQQQQARLQQMQQPIGVKSAPGLRNLLLPQHQQVQQQQPQQQIRTNMQPGPNQQQWRFSRT
Length1039
PositionUnknown
OrganismTetranychus urticae (Two-spotted spider mite)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Chelicerata> Arachnida> Acari> Acariformes> Trombidiformes> Prostigmata> Eleutherengona> Raphignathae> Tetranychoidea> Tetranychidae> Tetranychus.
Aromaticity0.05
Grand average of hydropathy-0.798
Instability index71.52
Isoelectric point9.22
Molecular weight115154.04
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32792
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.92|      15|      15|     294|     308|       1
---------------------------------------------------------------------------
  294-  308 (27.96/ 6.59)	QQNQLQQQQQQQQQQ
  310-  324 (29.95/ 7.85)	QQQQQQQQQQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     154.10|      31|      33|     656|     687|       3
---------------------------------------------------------------------------
  656-  687 (54.94/17.92)	GQ..PMMGQSIGQAMGQQPQPQMIQQIGpVVQQS
  690-  722 (52.32/13.49)	GQmtPMQGQSQQNQQHLQPQPQLGQQVG.FRNQS
  962-  989 (46.83/11.10)	QQ..PLVRQQLQQHIHQQ.QQQQ.QQAR..LQQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.22|      25|      27|     420|     446|       4
---------------------------------------------------------------------------
  331-  349 (27.69/ 6.28)	..P.PPPPPTFIQSDKTSTPDS...
  421-  445 (46.65/15.32)	SSPFSAPPPSPMNRASVPSPLSQNA
  446-  468 (45.88/15.51)	PSPMPVPPGGMMNQDSNVS..SQQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.32|      29|      33|     225|     257|       5
---------------------------------------------------------------------------
  228-  256 (48.42/19.09)	ERPISPQANQS.SNKSLEKASSSPSPSNQG
  258-  287 (46.90/19.00)	KRPLSPASSAVySKDSVQITIHQQQPQQQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     149.56|      32|      33|     736|     768|       6
---------------------------------------------------------------------------
  736-  767 (50.42/19.25)	.....GMMNQGLIPNQMIAsGG.QRPQQTNVLLNQALG
  768-  800 (48.72/15.68)	PiqgtGGHPQFAQQNQII..GG.QQ.QTTATLVTQS.G
  999- 1028 (50.42/16.49)	P....GLRNLLLPQHQQVQ...qQQPQQ.QIRTNMQPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.84|      19|      25|      76|      98|       7
---------------------------------------------------------------------------
   76-   94 (38.20/36.62)	ASFCFGPTSSTHKLLQWFD
  103-  121 (35.64/21.10)	ASSCSHITEGIATSLQCFD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.67|      24|      31|     360|     387|       8
---------------------------------------------------------------------------
  360-  387 (36.03/27.28)	MPVLTSQLSSIRQGAPNVVSQQsgppGQ
  393-  416 (45.64/23.63)	MGFPGTQIRSVQRENYNPVMMQ....GQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.31|      21|      25|     591|     615|      10
---------------------------------------------------------------------------
  594-  614 (39.25/23.23)	TMMIVIYAPDKNTFMG.FLPMN
  617-  638 (28.06/11.92)	AFMHKIQAAYKNARTAkILQGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.88|      14|     380|     515|     535|      12
---------------------------------------------------------------------------
  515-  529 (21.21/27.05)	DLEKNaEKWPSMLNL
  542-  555 (23.68/ 8.35)	PVLKN.ESHVVVLNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.74|      13|      17|     926|     942|      16
---------------------------------------------------------------------------
  926-  942 (16.41/19.12)	NLsKGhllRPEE..MAFPQ
  946-  960 (22.33/10.14)	NL.QG...KPPDnaQAHPQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32792 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EACKQTELEFAQQHVDHTIPSGHTFFDQSTGMHYSKSSSGDLGTNFRNISASPRTGPDPETDLNLSKGHLLRPEEMAFPQTGGNLQGKPPDNAQAHPQHQQPLVRQQLQQHIHQQQQQQQQARLQQMQQPIGVKSAPGLRNLLLPQHQQVQQQQPQQQIRTNMQPGPNQQQWRFSRT
2) KILQGNQQQISQQPNQQSPQTNIGQPMMGQSIGQAMGQQPQPQMIQQIGPVVQQSGPGQMTPMQGQSQQNQQHLQPQPQLGQQVGFRNQSVQGIRNNAGPNNHGMMNQGLIPNQMIASGGQRPQQTNVLLNQALGPIQGTGGHPQFAQQNQIIGGQQQTTATLVTQSGPPMHQQPQPQPMQQQPQQQQIHFNSQNQSNSQPPPPQQPQQHSTHDVRNRNLLNIQQLQKQ
3) RPISPQANQSSNKSLEKASSSPSPSNQGQKRPLSPASSAVYSKDSVQITIHQQQPQQQLQQQQQVQQNQLQQQQQQQQQQQQQQQQQQQQQQQQQQQQHIRGPPPPPPTFIQSDKTSTPDSIAPLRPIPNTMPVLTSQLSSIRQGAPNVVSQQSGPPGQSNQTRMGFPGTQIRSVQRENYNPVMMQGQLRGASSPFSAPPPSPMNRASVPSPLSQNAPSPMPVPPGGMMNQDSNVSSQQMPMPNSMMK
863
633
229
1039
861
476










Molecular Recognition Features






MoRF SequenceStartStop




NANANA