<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32785

Description Uncharacterized protein
SequenceMGHEEEVMRIGKKLDKMGAKKEGFGQALDLLKALKDIPITLEILQRTRIGMAVNNLRKNCSNEEVISLAKSLIRSWKKLLEVSKEGKSDANNSDNSNPAGSSAGKTTGSGNGGSGVSNAGNNKNGANKNTAARNNAPAGDNKPKQSFPSNTSNEIRLKGRQLLAEALKQGMETDTNETFFDPEDLAAQIEDCIYKEFKDINMKYKNRIRSRVSNLKDPKNPDLKFNVLRGHISAAKIAVMTAEEMASNEMKELRQKLTKEAIDEHQMAVTGGTKTDLIKCPKCKRSNTTYNQVQTRSADEPMTTFCYCNECGHRWKFC
Length318
PositionUnknown
OrganismTetranychus urticae (Two-spotted spider mite)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Chelicerata> Arachnida> Acari> Acariformes> Trombidiformes> Prostigmata> Eleutherengona> Raphignathae> Tetranychoidea> Tetranychidae> Tetranychus.
Aromaticity0.04
Grand average of hydropathy-0.808
Instability index36.96
Isoelectric point9.24
Molecular weight35167.54
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
nucleic acid binding	GO:0003676	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32785
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.43|      37|      37|      84|     120|       1
---------------------------------------------------------------------------
   84-  120 (62.24/26.21)	KEGKSDANNSDNSNPAGSSAGKTTGSGNGGSGVSNAG
  123-  159 (63.18/26.69)	KNGANKNTAARNNAPAGDNKPKQSFPSNTSNEIRLKG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.00|      17|      18|     196|     213|       3
---------------------------------------------------------------------------
  196-  213 (25.23/21.21)	EFKDINMKYkNRIRSRVS
  217-  233 (30.77/20.81)	DPKNPDLKF.NVLRGHIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.82|      27|      40|      14|      43|       6
---------------------------------------------------------------------------
   14-   43 (37.78/38.07)	LDKMGAKKEGFGQALDLLKALKDIpitLEI
   56-   82 (44.04/33.51)	LRKNCSNEEVISLAKSLIRSWKKL...LEV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32785 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SKEGKSDANNSDNSNPAGSSAGKTTGSGNGGSGVSNAGNNKNGANKNTAARNNAPAGDNKPKQSFPSNTSNEIRLKGRQLLAEALKQGMETDTNETFFDP
83
182










Molecular Recognition Features






MoRF SequenceStartStop




NANANA