<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32754

Description Uncharacterized protein
SequenceMSYPVNISIEAPVENQIQEISYDGQEIYQMPLTMSENLAKLAQKIDFSKASCEDLKKEDRDDSCEEDVKDATYQSSVWPWDSVRNKLRNALTEICVLADVLAIAKEKRYMVLDPIPQEAPEPKPMTQVYARKKALSGAASVLLTGAERLRASQNEASRNRGSPPDFHIELLRLRQNWRLKKVSNTIIGDISYRTAGSKYAHTGIFEVVKHNQDEIFLRLPKLRKNLIKCISPPPSPGANSKLTSALKLTLPSPIIRPCPLSSFNFIDQEDLCSANVSLQNFSSTTAPIPEANWQKRLEAAQNVLFCKELFSQLAKEAVGLQAAIPHTVIGNQIIASTFPGMHLKITLRHKNGGGETFNESRRGQKGEHDHVLEHSLHQMLREVHHKNTHHPFPHPSSAPLGPSKRRCLAGPSATDRYYLLEMTKSQTLLEQIIQQSQHTLLRQRTEYVLDTIIKEVKDPLIVTHWNALNSPTLSCVKINIITHGYDTICRTSLVIQVNEKSLKCVCRDGRVMHMSYEGQELRDLIFCQIYQHQISAVQALARCMGWQYLANSSHLGIGTVEPLGNASSCILASPMGDRLIAVRCEPQGGCQVSIAHSPRKDFFSGQLVKERKWENLGGAFKEVRWDKMEGRNFLNKMELLMASLTSS
Length647
PositionHead
OrganismRhodnius prolixus (Triatomid bug)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Paraneoptera> Hemiptera> Heteroptera> Panheteroptera> Cimicomorpha> Reduviidae> Triatominae> Rhodnius.
Aromaticity0.06
Grand average of hydropathy-0.381
Instability index50.75
Isoelectric point8.75
Molecular weight72715.65
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32754
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.09|      17|      21|     561|     577|       3
---------------------------------------------------------------------------
  561-  577 (31.94/16.34)	EPLGNASSCILASPMGD
  585-  601 (33.15/17.19)	EPQGGCQVSIAHSPRKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.97|      17|      18|     462|     479|       4
---------------------------------------------------------------------------
  462-  479 (26.75/23.58)	VTH.WNALNSPTLsCVKIN
  481-  498 (25.22/16.41)	ITHgYDTICRTSL.VIQVN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.09|      27|     492|      14|      40|       5
---------------------------------------------------------------------------
   14-   40 (48.43/31.46)	ENQIQEISYDGQE........IYQMPLTMSENLAK
  508-  542 (41.66/26.17)	DGRVMHMSYEGQElrdlifcqIYQHQISAVQALAR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.81|      14|      40|     178|     191|       6
---------------------------------------------------------------------------
  178-  191 (23.12/21.21)	RLKKVSNTIIGDIS
  218-  231 (24.69/23.28)	RLPKLRKNLIKCIS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32754 with Med17 domain of Kingdom Metazoa
Unable to open file!