<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32705

Description Uncharacterized protein
SequenceMASNNKNNSDKIDDGDCDSEIGSVKKLLEKLQKYSAMDKLIKKDEKKILKVLQKLESCNMTVEILKKTKVGLQVNQLKKKTDNTAIKTQAKSVVERWMKIFDASTAKRKEDKKAGKSSSGVAKTQPPPSPSTPSPPLLPPSPATPTLPSPPSAPSANLEKKPTKSPVSSSAVAAAAALNPSSSSQLSSQSSSSESTLVRSSSSSSKRLKIDDGHFHTDDPVRVSTRNMLFNALRSEGDDESDIQQLAAEIESCIFDEMKDTGTKYKNRIRSRTFNIKDPKNPQLKEKILNGLITPQRLAVMTSTEMASDELKNLRENFTKKAIHEAQAPSIAAAKSDLFRCSKCGKRDTTYNQVQTLSGDEPMTTFVVCNQCGNRWRFS
Length379
PositionUnknown
OrganismHelobdella robusta (Californian leech)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Annelida> Clitellata> Hirudinea> Rhynchobdellida> Glossiphoniidae> Helobdella.
Aromaticity0.04
Grand average of hydropathy-0.740
Instability index57.78
Isoelectric point9.49
Molecular weight41555.78
Publications
PubMed=23254933

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
nucleic acid binding	GO:0003676	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32705
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.56|      15|      19|     126|     142|       1
---------------------------------------------------------------------------
  126-  142 (25.62/18.81)	PPPsPSTPSPPlLPPSP
  148-  162 (29.94/13.62)	PSP.PSAPSAN.LEKKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.74|      19|      20|      25|      43|       2
---------------------------------------------------------------------------
   25-   43 (31.42/17.72)	KKLLEKLQKYSA..MD.KLIKK
   46-   67 (21.33/10.24)	KKILKVLQKLEScnMTvEILKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.29|      19|      19|     168|     186|       3
---------------------------------------------------------------------------
  165-  183 (29.65/13.89)	SPVSSSAVAAAAAL...NPSSS
  184-  205 (24.64/10.51)	SQLSSQSSSSESTLvrsSSSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.70|      10|      27|      78|      87|       6
---------------------------------------------------------------------------
   78-   87 (16.73/11.13)	KKKTDNTAIK
  107-  116 (16.97/11.41)	KRKEDKKAGK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32705 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) STAKRKEDKKAGKSSSGVAKTQPPPSPSTPSPPLLPPSPATPTLPSPPSAPSANLEKKPTKSPVSSSAVAAAAALNPSSSSQLSSQSSSSESTLVRSSSSSSKRLKIDDGHFHTDDPVRVSTRNMLFNALRSEGD
104
238










Molecular Recognition Features






MoRF SequenceStartStop




1) ERWMKIF
95
101