<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32691

Description Uncharacterized protein
SequenceMVCEYNGNLTVAVRSIIVKAWKERWTEEQWSRAMQSYMIYVESSKTFNVLLEQVMISSSPNVHILQYLKHALFSKMATFASAMKSVVGYEDVSQTFCISTLLKFVEELFPHILSSSHPVDLQQIPDSWVQLLTWLYTIISRTLIKLSTDSKYSLEMAARVLKMSSALLDKIHSNEISRAYVALSLAPSDNSPSNRSQKLEASTNEISRLLSTPTYQQLSEELKTAISSCLKHDFNPNYPVGPPYIVDFTRQNLNVCVNVLITMEAYLYRVNDLQLLADKLIALETLQGLPRSVLYCEILRSSFLGLLDNDVIPEDIKWSSFIFLKIPQLFQKMVATSKKDSEDEQSELYQGLKLLLDSQSLFVSVDYKCKCSSSLQSLLNELVRYSLLSEASSKDIIFRRQKDWNASSCNTIIQSLTNEALFLIQKAEPTATTILKSLDITKNQDLLLNVMTQMMSGKSFELISSAAGAIGKLQNFVMKLIIVNESSKTATGETGKNSQTRAALFDISFLMLCHIVQFFGIEIISSCPEGSNSFFFQWATRCLPDKHDQFKLSSLQMNSDPFKVEFVLSQLTGPEFKTSLVKWNEMCCNSPQAIQESLVLWEYNIIDDELMRQILDSAKGTMCCLMVVIATWLCSLYNVSGEDRQQRCCKMLAQLLQPRNPSDSVVNFSERNQLAKEFVYYVADLTLPPSALSNIANMLQQKQQLNGNTTLPNHQPPFGKRFLLQQTQPQQYSHTIFTLKEKILACHELPKLFSQTLNSAYRKNSIGVRDLLHLKEIYRVAGSQWFITQMVKDITKLDKPEDVERLVCLYHSLCHLDMKSLTVNLIDKVIPNIMTSSCHLKSLMDPWGTGIAKLCTLNVATLYKMATRKVGVTDGDSSGSNDKKRPWNDSTSDDNMETPSKIKKEAASQDVNNKNYSSNAGAGFNALSLTDDFLFSDQREITPMNDSPPSSSTSPSSSFLDDLSDSLACMFLMFQPCVTGTLICPRTGFALAFIKESLKLDRDCAQFILHNLPSSMVPQLMRYLNSDITPHHIFTMVKRDSPSWKYTISRALHNYSHYKQQQLQL
Length1065
PositionTail
OrganismHelobdella robusta (Californian leech)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Annelida> Clitellata> Hirudinea> Rhynchobdellida> Glossiphoniidae> Helobdella.
Aromaticity0.09
Grand average of hydropathy-0.144
Instability index50.08
Isoelectric point6.85
Molecular weight120485.37
Publications
PubMed=23254933

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32691
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      52.85|      10|      22|     812|     821|       1
---------------------------------------------------------------------------
  812-  821 (20.33/15.58)	SLCHLDMKSL
  836-  843 (16.23/10.55)	SSCHL..KSL
  853-  862 (16.29/10.61)	KLCTLNVATL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.78|      11|      33|     174|     184|       2
---------------------------------------------------------------------------
  174-  184 (20.02/11.78)	NEISR.....AYVALS
  204-  219 (15.76/ 7.78)	NEISRllstpTYQQLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.64|      16|      24|     686|     703|       3
---------------------------------------------------------------------------
  686-  703 (24.54/20.01)	TLP...PSALSNIanMLQQKQ
  710-  728 (26.10/14.45)	TLPnhqPPFGKRF..LLQQTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.56|      23|      29|     525|     553|       4
---------------------------------------------------------------------------
  495-  508 (18.13/ 7.12)	........GKNS.....QTRA.....ALFDIS
  525-  553 (35.99/40.79)	SS...CPEGSNSfFFQWATRClpdkhDQFKLS
  568-  587 (20.44/ 7.37)	LSqltGPEFKTS.LVKWNEMC...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.48|      11|      33|     601|     613|       6
---------------------------------------------------------------------------
  601-  613 (17.55/20.44)	W...EYNIIDDElmRQ
  632-  645 (16.94/10.43)	WlcsLYNVSGED..RQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.10|      27|      34|     329|     360|       7
---------------------------------------------------------------------------
  334-  360 (42.12/33.80)	VATSKKDSEDEQSELYQGLK..LLLDSQS
  365-  393 (37.99/14.79)	VDYKCKCSSSLQSLLNELVRysLLSEASS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.98|      18|      21|     397|     416|      10
---------------------------------------------------------------------------
  397-  416 (26.74/22.71)	IFRRQKdwNASSCNTIIQSL
  421-  438 (29.24/16.36)	LFLIQK..AEPTATTILKSL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32691 with Med24 domain of Kingdom Metazoa
Unable to open file!