<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32674

Description Uncharacterized protein
SequenceMSDPIGLADILGGRVGALRAATEALMVELSSLHGGSSGAKDEDPASLAVGTTTLKNRLDRVQTNLNVLRKFSPEFEDKTKNIDAVSQTQRNLMLEYYWKTQIHEMAGKGANVWLAQMTEWFPRMEYVAAPGASLHPGSGQPEKVKAVMTVNERFVPKPTKRARMLVFDEQGDVQPVDLNEMMDYIMRRNKSIKFWKHTETTRGGRRVIKSISCEVNKEMMVYMSFCPAIPEGGPNGESGVAASPMTPSTPNSPAYHRSRATRAAKLKAKKIVAKKPRRDDMMTKAKMAAEEATKIEQEELRKLIIDARETGKEQELAKAAGLQVTKYIDRVSILPPNEDAPLGAWSSSKHCVFEQITLHARKALHYFRVHYPESSFYHFFSWLANYEKLYNTPCMACKKILAKNASDSAFVPPTFRDYATGFPYHTSCI
Length429
PositionTail
OrganismSaprolegnia diclina (strain VS20)
KingdomOomycetes
LineageEukaryota> Sar> Stramenopiles> Oomycota> Saprolegniales> Saprolegniaceae> Saprolegnia.
Aromaticity0.08
Grand average of hydropathy-0.472
Instability index50.16
Isoelectric point9.29
Molecular weight48074.74
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32674
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.86|      26|      31|     260|     288|       1
---------------------------------------------------------------------------
  260-  285 (40.70/31.14)	ATRAAKLKAKKIV..AKKPRRDDMMTKA
  292-  319 (34.16/17.01)	ATKIEQEELRKLIidARETGKEQELAKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.30|      19|      95|      89|     109|       2
---------------------------------------------------------------------------
   91-  109 (35.62/25.31)	NLMLEYY..WKTQIHEMAGKG
  111-  131 (32.68/16.09)	NVWLAQMteWFPRMEYVAAPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.74|      18|      99|      31|      49|       3
---------------------------------------------------------------------------
   10-   27 (28.11/12.94)	ILGGRVGALRAATEALMV
   32-   49 (31.63/20.76)	LHGGSSGAKDEDPASLAV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32674 with Med27 domain of Kingdom Oomycetes
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