<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32670
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPLMLDNAMNGGPMQVDQLDVDDLFGDGVGVGVGVGVSLSLQTARPPSKQLRQRIDELRTRGCCQGVAWSRSGAIASVSPDGRSLETRFLRSHPDNGEWGLSEPTKVELVSTNPSSPIVHLAWASTASPELAVIDATGRVSILTYSINLNRPFATRKWDHEPCDDLHAVVGCYWLALAPQSKQYYVCHGPAVKDGNQYRYESSFVHAYGPWHPNQSKSALLCVTANGNLKMFWAQNNNKIEETTLELESINSSDDLITHAALHSDKSSLWVVLATASKQLKVVRVGIHWGLPQSQSDNKPPPGSQPLNPTMQEKHVAISSWLPGGSKILPSTMDLTGQGWAPLVILTVRTYLPTPNTPYQETQSIIDKWEVINDQPQSLHPAFEQLGNRRNSTGSAPTPKPTSRLKKYDPVVINKAIIGVHSLQYGRVVCLAFSDGSVEYRDRFTLQEIYNEMNLERIMSLNQVGFTFQDDSPCLQAALSPTNCSLVKIQDDGKVKWTRLHYPLGDIGNSNQEAQYSAVLAGLTVAASTATFNSINYDDILAVARPYADKKRFTFDWMNEIVRMLKIPVDYSEDTHHDSLVRNSSLQMCLSILNHLGYKGMFQPRSFGSKFAMLALNARNVVILITIASNTPVNIREKLSPLDEHEVVDALSGCAKWSLDLLSWLTDSLFALLDDPQFLALLTLQRFSEMSAYLQSRSDVSLHLLLCSSTRGFLSAVCRRILHLEILSNRAIEFYERRAAISNANDPNAATSKNLHTVLYKAYQKMQRVTSSSLIKVQEFDRLLTVLNNDIRSAYQTSLAALANKNPAGAQGNPKAIEQQIKGAQFHCELNMLLASSPPPSFLQVLLKFFNTDLKNYRAQTDPSKLFFADFDLLEIDDDRRSLSARKARGQYIDAFKRVELVGPPVRGAKELEEAKTPQWRRCVRCAAIMEDASGSRPGFTFVLAQQRKCSCGGHWALLPRGALIS |
Length | 966 |
Position | Tail |
Organism | Colletotrichum gloeosporioides (strain Cg-14) (Anthracnose fungus) (Glomerella cingulata) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Hypocreomycetidae> Glomerellales> Glomerellaceae> Colletotrichum>
Colletotrichum gloeosporioides species complex.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.251 |
Instability index | 44.55 |
Isoelectric point | 8.15 |
Molecular weight | 107232.87 |
Publications | PubMed=23902260
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP32670
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 100.51| 29| 253| 29| 57| 1
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29- 57 (49.38/26.02) VGVGVGVGVSLSLQTARPP..SKQLRQRIDE
283- 313 (51.13/27.18) VRVGIHWGLPQSQSDNKPPpgSQPLNPTMQE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 115.09| 35| 128| 438| 472| 2
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438- 472 (61.29/46.92) VEYRDRFTLQEIYNEMNLERIMS.LNQVGFT..FQDDS
569- 606 (53.80/40.19) VDYSEDTHHDSLVRNSSLQMCLSiLNHLGYKgmFQPRS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 76.02| 21| 95| 166| 186| 4
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166- 186 (40.46/25.83) LHAVVGCYWLALAPQSKQYYV
262- 282 (35.56/21.83) LHSDKSSLWVVLATASKQLKV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 109.48| 34| 254| 222| 255| 5
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222- 255 (59.01/38.44) CVTAN...GNLKMFWAQNNNKIEETTLE..LESINSSDD
474- 512 (50.48/31.86) CLQAAlspTNCSLVKIQDDGKVKWTRLHypLGDIGNSNQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 110.14| 34| 95| 811| 846| 9
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811- 846 (53.44/44.73) QGnPKAIEqQIKGAQF....HCELNMLLASSPPPSFLQVL
907- 944 (56.70/37.33) RG.AKELE.EAKTPQWrrcvRCAAIMEDASGSRPGFTFVL
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