<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32658

Description Transcription mediator subunit Med12
SequenceMDRLFQTVVSRLESSWSNSPERQRAYSALLGRLRIFDTQHFDLRMTDWVHHVSALKSRPGLADIYPLLISIGCLTLPILLTTTTVDSSSVARNPAAPVNSTTTYMQEVLSLCVMPLALKTALTPEETYRFYIQQKVAPRQNHKDMVVLVRNALVEYARLQSQPGISLPLSNTTCGDNMLELLKLLVLLDAPSVVQSLGTKTADPALSGLFAQITSKLLMPGAQDGTPLSFETVLELANEFTLPFCQLKLSIGLPADTTTSPGGGEQAMSQFDMFSRAMDRAVSANNVMWTSMLPYLNEEVTEHLKRQAHLRFLGLFPSQKNPSASDPLSQDSIQLAGSLLSVVEAIVRSRPALRTSQLTSGMVEKLSELWEILAAGGDDKKELRTSILRHWLPALLKFITLHTNVNEAAPVPAQGANMKPPTSTTAFEIRGRILIVLAGLTLELDGLALEEPQTGRPLSQQVFDLALLLVDSLPDDTRLQCVRVLLTNGTPQNPASSDARLRYLFSQMAPPTDQFVLAHRQQPTTQQAGPPRLKVPISMQGTDKLTPFTYRRWEMLSEPTPNIGENDTALSLTLFEAIKIQ
Length581
PositionKinase
OrganismColletotrichum gloeosporioides (strain Cg-14) (Anthracnose fungus) (Glomerella cingulata)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Glomerellales> Glomerellaceae> Colletotrichum> Colletotrichum gloeosporioides species complex.
Aromaticity0.06
Grand average of hydropathy-0.065
Instability index45.79
Isoelectric point6.19
Molecular weight64016.04
Publications
PubMed=23902260

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32658
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     170.84|      55|      79|     113|     170|       1
---------------------------------------------------------------------------
  113-  170 (85.53/72.44)	VMPLALKTAlTPEETYRF.YIQQK.VAPrqNHKDMVVLVRNALVEYARLQSQPGISLPLS
  194-  250 (85.31/60.66)	VQSLGTKTA.DPALSGLFaQITSKlLMP..GAQDGTPLSFETVLELANEFTLPFCQLKLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     147.08|      27|     129|     310|     336|       2
---------------------------------------------------------------------------
  310-  336 (47.31/26.07)	LRFLGL.........FPSQKNPSASDPLSQDSIQLA
  396-  430 (30.36/14.18)	LKFITLhtnvneaapVPAQ.GANMKPPTSTTAFEIR
  442-  466 (38.24/19.71)	LELDGL...........ALEEPQTGRPLSQQVFDLA
  501-  518 (31.18/14.76)	LRY..L.........F.SQMAPPT......DQFVLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.05|      20|      29|     339|     358|       4
---------------------------------------------------------------------------
  339-  358 (31.40/20.85)	LLSVVEAIVRSRPALRTSQL
  369-  388 (33.65/22.85)	LWEILAAGGDDKKELRTSIL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32658 with Med12 domain of Kingdom Fungi
Unable to open file!