<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32642
Description |
RNA polymerase II holoenzyme cyclin-like subunit |
Sequence | MAANYWESTQRKHWQFTKQDLAAIRQRLDDEDPGLVQMFPLPQLRHLNIYFNQQINRLSKRIGLRQQVMATAQVYLKRFYTRIAIRQTNPYLVLTTVLYLACKMEECPQHIRMMTQEARSLWPSDLHGHDPARVGECEFSLISEMHSNLIVHQPYRSLLGVQDEFGLTQDEMSLAWTVINDHYMTDLPLLHPPHVVALTAVLLALVLRPSANTPAAGGAGGNAGAAAAAAAAGAGGVAMAATALAQAQAQVQARAAAIAAAGAGGGTPGFGSQGSQQQAGFSQGNSQGSLQGDSAAAEPKKVTDPRLAKVQRFAAWLADSNIDIEAMVDCTQELISFYECHEQYNDKHTKEQISRFIKARNLDK |
Length | 364 |
Position | Kinase |
Organism | Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (Soil fungus) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Sordariomycetidae> Sordariales> Chaetomiaceae> Chaetomium.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.244 |
Instability index | 51.93 |
Isoelectric point | 6.86 |
Molecular weight | 39848.80 |
Publications | PubMed=25720678
|
Function
Annotated function |
Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex. The SRB8-11 complex
phosphorylates the C-terminal domain (CTD) of the largest subunit of
RNA polymerase II (By similarity).
ECO:0000250
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | cyclin-dependent protein serine/threonine kinase regulator activity GO:0016538 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP32642
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 115.98| 26| 28| 211| 236| 1
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211- 236 (44.84/17.61) ANTPAAGGAGGNAGAAAAAAAAGAGG
241- 265 (39.12/14.63) ATALAQAQAQVQAR.AAAIAAAGAGG
274- 297 (32.02/10.95) GSQQQAGFSQGNSQGSLQGDSAAA..
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 53.48| 20| 22| 55| 76| 2
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48- 72 (28.77/17.88) NIYFnqqinRLSKRIGLRQQ....VMATA
73- 97 (24.72/12.05) QVYL....kRFYTRIAIRQTnpylVLTTV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 32.07| 13| 38| 139| 155| 3
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125- 143 (18.18/ 7.73) DLHG....HDPA...rvgeceFSLIS
144- 169 (13.90/13.36) EMHSnlivHQPYrsllgvqdeFGLTQ
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