<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32602
Description |
Mediator of RNA polymerase II transcription subunit 12 |
Sequence | MNNGSGRYLLTPPDDLHPYVPSSKPQEQVYPDFKPWEHTAAEDQILANFVAKGFYHTPMVNFESISARSSVHESLVTQSNILSQQFDKIIKIREDHINKIPSNSTTTLHGPGFQLPNRITLTDHRKETWLHELSSSHTSLVKIGKFIPHGLKRRQVIEQCYLKFIPLKRAIWLIKCCYFIEWKSNHKKKRSNAAGADDAISMHLLKDWTDTFVYILEKLIFDMTNHYNDSQQLRTWKRQISYFLKLLGNCYSLRLINKEIFHHWLVEFINKMENFEFLPLSLHILMIFWNDICQIDTNAPVAATITSSQKEPFFLVTKITDMLLHKYYIVSSSKSMINDENYIINDIKKNNKIKLNILKILSSLILKIFQEQSLEVFIFPTSNWEIYKPLLFEIVSNADTNQNSDMKKKLELISYRNESLKNNSSIRNVIMSASNANDFQLTIVTCKQFPKLSCIQLNCIDTQFTKLLDDNPTEFDWPTYVDQNPLTMHKIIQLILWSIHPSRQFDHYESNQLVAKLLLLRINSTDEDLHEFQIEDAIWSLVFQLAKNFSAQKRVVSYMMPSLYRLLNILITYGIIKVPTYIRKLISSGLLYLQDSNDKFVHVQLLINLKISPLMKSQYNMVLRNVMEYDVKFYEIFNFDQLVEITEQIKMRILSNDITNLQLSKTPLSIKIMVAEWYLSHLCSGILSSVNRTVLLKIFKIFCIDLEVFHHFFKWIEFIVYHQLLSDIESLEALMDILLCYQKLFSQFINDHILFTKTFIFIYKKVLKEKDVPAYNVTSFMPFWKFFMKNFPFVLKVDNDLRIELQSVYNDEKLKTEKLKNDKSEVLKVYSMINNSNQAVGQTWNFPEVFQVNIRFLLHNSEIIDTNTSKQFQKARNNVMLLIATNLKEYNKFMSIFLKRKDFTNKNLIQLISLKLLTFEVTQNVLGLEYIIRLLPINLENNDGSYGLFLKYHKEQFIKSNFEKILLTCYELEKKYHGNECEINYYEILLKILITYGSSPKLLATSTKIIMLLLNDSVENSSNILEDILYYSTCPSETDLNDIPLGSGQPDNDTVVTNDDKSDDDDHTVDEIDHVEYYVMMDFANLWVFQAFTCFCIKKIMENNEPAMAMEDLKNFIFQIIEITNSNDLCSQIFDQLKDMQTIEMITQIVEKDFCTSCLQNNNQKIDDNYIVVVIEIITSLSMRFQRETSGMIVISMENYHLLIKIIRQLSELNEGNLSKREIQIDAVLKIFSFHQDSIFQRIIADLSADKPTSPFIDSICKLFDKISFNLRLKLFLYEILSSLKSFAIYSSTIDAPAFHTSGKVELPKKLLNLPPFQVSSFVKETKLHSGDYGEEEDADQEESFSLNLGIGIVEIAHENEQKWLIYDKKDHKYVCTFSMEPYHFISNYNTKYTDDMATGSNDTTAFNDSCVNLSLFDARFERKNPH |
Length | 1427 |
Position | Kinase |
Organism | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes>
Saccharomycetales> Saccharomycetaceae> Saccharomyces.
|
Aromaticity | 0.11 |
Grand average of hydropathy | -0.167 |
Instability index | 36.43 |
Isoelectric point | 6.06 |
Molecular weight | 166858.61 |
Publications | PubMed=7774808
PubMed=1574125
PubMed=24374639
PubMed=12200444
PubMed=14562106
PubMed=15175151
PubMed=15477388
PubMed=16076843
PubMed=16109375
PubMed=15601835
|
Function
Annotated function |
Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex. The SRB8-11 complex
phosphorylates the C-terminal domain (CTD) of the largest subunit of
RNA polymerase II RPB1 at serines 2 and 5.
ECO:0000269 PubMed:12200444
ECO:0000269 PubMed:15601835
ECO:0000269 PubMed:16076843
ECO:0000269 PubMed:16109375
|
GO - Cellular Component | mediator complex GO:0016592 IDA:SGD
|
GO - Biological Function | transcription coactivator activity GO:0003713 IDA:SGD
|
GO - Biological Process | negative regulation of transcription by RNA polymerase II GO:0000122 IMSGD
positive regulation of transcription by galactose GO:0000411 IMSGD
positive regulation of transcription by RNA polymerase II GO:0045944 IMSGD
|
Interaction
Repeat regions
Repeats |
>MDP32602
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 54.49| 15| 17| 145| 161| 1
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145- 161 (25.92/24.97) KFIPhgLKRR.QVIEQCY
163- 178 (28.57/18.70) KFIP..LKRAiWLIKCCY
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 961.77| 297| 349| 547| 894| 2
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198- 342 (115.85/60.48) .............................................................................................................................................................................................................................DAISMHLLkdWTDTFVYILEKLIFDM.TNHYNDSQQLRTWKRQISYFLK.LLGNCYSLRLINKEIFHHwlvefiNK.MENFEFLPLSLHILMIF.............WN..DICQIDTNapvaatitssqkepfFLV..TKITDMLLHKYYIVSSSKSM....INDENY
547- 890 (422.76/440.81) KNFSaQKRVVSYMmpSLyRLLNILITYGIIKVpTYIRKLISSGLLYLQDSNDKFV..HVQLLINLKISPLMKSQYNM.vlrNVMEYDVKFYEIF........NFDQLVEITEQIKMRILSNDITNlqlsktplSIKIMVAEWYLShLCS..........GILSSVNRTVLLKIFKifcIDLEvfHHFFKWIEFIVYHQLLsdieslealmdillcyqklfsQFINDHIL..FTKTFIFIYKKVLKEKDVPAYNVTSFMPFWKFFMKNFPF.VLKVDNDLRIELQSVYND......EK.LKTEKLKNDKSEVLKVYSMINNSNQAVGQtWNfpEVFQVNIR...............FLLHNSEIIDTNTSKQFQKARNNVMlLIATNLKEY
901- 1200 (423.16/308.45) KDFT.NKNLIQLI..SL.KLLTFEVTQNVLGL.EYIIRLLPINLENNDGSYGLFLkyHKEQFIKSNFEKILLTCYELekkyHGNECEINYYEILlkilitygSSPKLLATSTKIIMLLLNDSVEN........SSNILEDILYYS.TCPsetdlndiplGSGQPDNDTVVTNDDK...SDDD..DHTVDEIDHVEYYVMM.....................DFANLWV...FQAFTCFCIKKIM.ENNEPAMAMED........LKNFIFqIIEITNSNDLCSQ.IFDQ......LKdMQTIEMITQIVEKDFCTSCLQNNNQKIDD............N...............YIVVVIEII.TSLSMRFQRETSG...MIVISMENY
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 37.85| 12| 17| 383| 396| 3
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383- 396 (17.85/17.84) NWEIYKPLlfEIVS
403- 414 (19.99/11.37) NSDMKKKL..ELIS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 133.18| 35| 860| 343| 377| 4
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343- 377 (54.80/31.69) IINDIKKNNKIKLNILKILSSLILKIFQEQSLEVF
1206- 1240 (54.13/31.20) IIRQLSELNEGNLSKREIQIDAVLKIFSFHQDSIF
1263- 1284 (24.25/ 9.76) LFDKISFNLRLKLFLYEILSSL.............
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 193.82| 63| 354| 63| 133| 5
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63- 132 (95.34/75.85) ESISARSSVHESLVTQSN........ILSQQFDKIIKIredHINKIPSNSTTTL.HGPG.FQLPnriTLTDHRKETwLHE
418- 490 (98.48/58.25) ESLKNNSSIRNVIMSASNandfqltiVTCKQFPKLSCI...QLNCIDTQFTKLLdDNPTeFDWP...TYVDQNPLT.MHK
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