<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32560

Description Uncharacterized protein
SequenceMAKGERETLPVYELRPPPWLPKTHASADLGYTGFYPPRPGDVEENLAHSAVQNGLTLPPVVSAEAYTAHDPTRDGRQQVQHLEDLMNKIFLRRAENIPPVPASTFRMPSRVTLNETKRQQWFADLANTEVPLYKLGKNVPHGAKGHDLLDLLHSNKVEIQRAVWFLRVFGGNESAGLRNKPGYNPTQYSIEWANVVTSYMKKQLADIALPTAPRPGLNIKITFKNMLADPQPRERWISRFSYCLELLRTFYAEGLVDNRTFLTWLVQQTGTCNLAQLALVAGLADQYLDGMLINRALTHHLIRSTVARDLLASVESTLRHLVARSFLALPDAFVSPRAWQLHSELLGDILSNAVSPAEGTPVQSAQALQQTFQYLFADVKRRNEGMLFRRLPPRVVGSLTSALSDIKLLNSLSGDTDISSVAFFEDCLGPHPSFARKLDILLTWSVTSLQYGDHRPYAASCILEEWRRKAGERAIRHEAESPDQFIQDQVFDWLDGSDDAADPGNLPAVSLLFGQLVKQGLFSYQQYVQRLIARGECGLSFSQEGHSRHRDFLRWTCLHTADASVIRQRKLTLYEVRARQTPEDQHEHQMRGELRLLLPEVFGGNGRDAHATTIKFWEICPALLTSPRYEQVRTIRMWLLPILHKHIASQESALADGNSDVLRTFTLSAILMARTKCYSSLLDLTLYTLERATTLQLLVGIIETLCQHMEIWACMGVMKHVAAGLYVAHQYWRGRGIHSRQLLSLLTQVDKGRYLEPAQRDQVVNDVSAYSHALHPMNQSVNAVPVHLPEVLLLATDRNPEAPSNLAKSLWYKYMTTPDWAWTVWDNTVASLRQIPIMIADVDGRRACAMNYAQFLWQVDQHLPQGFDCHVLEWFLGSGKNEAAALSVDVWDILMVVLLQLCIYGALTTTTVLQGLIYPVWQSAATASTPEQGQGLEVLLSAVNALFEHLLLKDECGTGLPPSDIFEAQGLQTRRRDVFREPHFSQLVDNLPALVLVEHNHFLSDLSRQGSRTLRESICRFSVFRLGVYRDLDAVRYAFEKLLESRTVSEELHADLVTALRLMLRDPDQGAEDGDGFAAAVSCLLTPWKLAATAIEMRLTLKQLAEGLSRDATRHAANASLDRLGTFVFHQCKSAEEVDFVAEMMTEVSRDVAGKFVNAGLQRIIELFREPFDPTSADDVQALVANTGEVLRLLSKIVERFRDSATLPILDPAVQDSFFSALVGRFAQMKEAWSAGRSDGAEDSMNEASHCIIFLARLLQFDLGFPGAWTARATEHGSTLCKTLFDLLMLHAEGSGLDTVAFPVLFDTLLYLLDETPVDPKSATFDPFWNYPEIELSQLPAGTPQEYRTRLRTLLPYVELNPAVAGLAYATRDASGSMTIVQPVQNRPWEWTEYLGDVPPGEVNPRTDERAGTRIEEHASVRNCASLALELFGARATGEILVPAHARGDQRVDAVLRTFQDDRSGESVFARDWREARVLLSDESKLGAGHDDEQAGVPAAHAVGQYQGASRRGSPALSNRSGAVRMAGSSSSGSRRQSPATSTAVGHPLSRLSVSTASEPIDVDAFDFAVATATTSSTKRKPEDDDEVQIIEGPSRSSKKPRAKVASKTKGRKR
Length1614
PositionKinase
OrganismFomitopsis pinicola (strain FP-58527) (Brown rot fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Polyporales> Fomitopsis.
Aromaticity0.08
Grand average of hydropathy-0.218
Instability index43.60
Isoelectric point6.06
Molecular weight179753.08
Publications
PubMed=22745431

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32560
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     317.10|     103|     187|     907|    1017|       1
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  907- 1017 (149.72/151.38)	LTTTTVLQGLIYPVWQSAATASTPEqgQGLEVLLSAVNAlfEHLLLKDECGTGLpPSDI...FEAQGLQtRRRDVFREPHFSQLVDNLPALVlVEHNHFLSDLSRQGSRtLRES
 1099- 1204 (167.38/130.45)	LTLKQLAEGLSRDATRHAANASLDR..LGTFVFHQCKSA..EEVDFVAEMMTEV.SRDVagkFVNAGLQ.RIIELFREPFDPTSADDVQALV.ANTGEVLRLLSKIVER.FRDS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     685.42|     231|     465|     151|     428|       2
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  151-  414 (334.40/318.06)	LLHSNKVEIQRAV..WFLRVF....GGNESAgLRNkpGYNPTQYSIEWANVVTSYMK..KQLADIALPTAPRP.GLNIKITFKNMLAdpQPRERWIsrfsyCLELLRTFyAEGLVDNRTFltWlvQQTGTCNLAQLALVAGL.ADQYLDGMLINRALTHHLIRSTVARDLLASVESTLRHLVARSFLAL...PDAfvsPRawQLHSELLGD..........ILSNAVSPAEGTPVqsaqalqqtfqyLFADVK.RRNEGMLFRRLPPRVVGSLTSALsDIKLLNSLSG
  623-  877 (351.01/262.57)	LLTSPRYEQVRTIrmWLLPILhkhiASQESA.LAD..GNSDVLRTFTLSAILMARTKcySSLLDLTLYTLERAtTLQLLVGIIETLC..QHMEIWA.....CMGVMKHV.AAGLYVAHQY..W..RGRGIHSRQLLSLLTQVdKGRYLEPAQRDQVVNDVSAYSHALHPMNQSVNAVPVHLPEVLLLATdrnPEA...PS..NLAKSLWYKymttpdwawtVWDNTVASLRQIPI............MIADVDgRRACAMNYAQFLWQVDQHLPQGF.DCHVLEWFLG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.37|      42|     465|     570|     620|       3
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  541-  599 (64.47/42.47)	FSQEGHSRHRDFLR.W.TC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................lhtadasvirqrkltlY.EVRARQTPEDQhEHQMRGELRLLLP
  602-  620 ( 9.48/ 8.23)	FGGNGRDAHATTIKfWeIC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1331- 1356 (29.42/10.17)	...................palltspryeqvrtirmwllpilhkhiasqesaladgnsdvlrtftlsailmartkcysslldltlytlerattlqllvgiietlcqhmeiwacmgvmkhvaaglyvahqywrgrgihsrqllslltqvdkgrylepaqrdqvvndvsayshalhpmnqsvnavpvhlpevlllatdrnpeapsnlakslwykymttpdwawtvwdntvaslrqipimiadvdgrracamnyaqflwqvdqhlpqgfdchvlewflgsgkneaaalsvdvwdilmvvllqlciygalttttvlqgliypvwqsaatastpeqgqglevllsavnalfehlllkdecgtglppsdifeaqglqtrrrdvfrephfsqlvdnlpalvlvehnhflsdlsrqgsrtlresicrfsvfrlgvyrdldavryafekllesrtvseelhadlvtalrlmlrdpdqgaedgdgfaaavsclltpwklaataiemrltlkqlaeglsrdatrhaanasldrlgtfvfhqcksaeevdfvaemmtevsrdvagkfvnaglqriielfrepfdptsaddvqalvantgevlrllskiverfrdsatlpildpavqdsffsalvgrfaqmkeawsagrsdgaedsmneashciiflarllqfdlgfpgawtaratehgstlcktlfdllmlhaegsgldtvafpvlfdtllylldetpvdpksatfdpfwnYpEIELSQLPAGT.PQEYRTRLRTLLP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      83.91|      19|      19|    1544|    1562|       5
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 1523- 1541 (29.59/19.80)	AVRMAGSSSSG.SRRQSPAT
 1544- 1562 (29.95/20.15)	AVGHPLSRLSV.STASEPID
 1565- 1584 (24.37/14.69)	AFDFAVATATTsSTKRKPED
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.64|      21|     895|     484|     505|       8
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  484-  505 (35.64/25.59)	QFIQDQVFDWLDGSDDaADPGN
 1382- 1402 (43.00/26.78)	QPVQNRPWEWTEYLGD.VPPGE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32560 with Med12 domain of Kingdom Fungi
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