<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32516
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MRSDMSSVDQWKTFVKRCLARRVDVEEFQDLTQLMQRRVPLKENELLDLLFETRSTVNVTWDPLLPVYVEGLCKARQVKAASALKRLLAHSTIRKGPESKCKTSTFMTDIKVIQDVMLSISTGAIPRVIPEAAELYDATAEWILAVVEWYNQTASEQNGGATTSADALSLFESLGILLAALSGTNKGLEMLSSDHYKDLRTKLGRALTAYIPLCVEVSLPLRQRLDALQKEFNLFGDQTSKQLDQSSMQSINVTSLQFEASVMDGPVINTRAGLYVYLNSMLVGRPLVDDALLVNYLTNRYEGHQEVLVVELTTAAFDVLCNGVNRNESSRTMFLFRSFLVNKLPAFFAAMIAASMVPIPMEMCVTQALSRLDPNSFPSFSQMFSMQGSSILSDARQEFLFACASHRLIQESSIERLLGENPMQTVPVGGPYQKDDLVSQINNSPGRAEQLIGEIESMEGNAGAIVGAITEVMLNLCNQKETMTLKNICNSISRRPQTLDVILLFRTTKQVLQPLCALLDSWHWDEDQGENQPVYDEFGGILLLVLVFKYRYNLTPADMGISSSDSFILKLLDRGSCSQRLNELNEKQNKDLGAWIGALFIAEGISEETMSACSPQDFYMLVATLFDQSLGAYLLEPFLLPSLVVALIWLGNHIWQSEIEPEIPLKALYSLVKPSSISGEAQAIHKTVLNITARPLEEQLKDVRTRHQARQNIDKISNIKPILDALDPYLSFRRVGGCSRSELDTWAAPATGGLLGSIRGTLQSLTMWSASSDINLQPQPYTHRQLLAGINLLGTTRILNTLVEELKHQAQAGSGDFALDIVATMVCAPIPESFAVEQNVVHSVDPAKEAMPRCAILTLRDALSILHQNVPKTSEKDPLTAEIIVRLWRRVSLLSAPPSRVSNIDVSNIIQNMELGVDGQNRMDLDMTGGTVDNNGGGEHDPGNIDRMLDNAAAAAAAGMNGNVGQDLGLGTGSGGMDAIDDVLNAADMAVGNPEFLDLDMEGMF |
Length | 1005 |
Position | Tail |
Organism | Penicillium oxalicum (strain 114-2 / CGMCC 5302) (Penicillium decumbens) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Eurotiales> Aspergillaceae> Penicillium.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.042 |
Instability index | 43.97 |
Isoelectric point | 4.90 |
Molecular weight | 110519.31 |
Publications | PubMed=23383313
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 ARBA:ARBA00003669
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP32516
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 420.28| 137| 353| 369| 513| 1
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369- 513 (213.00/182.74) LSRLDPnsFPSFSQMFSMQGSSILSDARQEF..LFACASHRLiqeSSIERLLGENPMQTVPvgGPYQKDDLVSQINnSPGRAEQLIGEIESMEGNAGAIVG..AITEVMLNLCNQ.KETMTL.KNICNSISRRPQTLD..VILLFRTTKQVLQ
723- 867 (207.27/152.24) LDALDP..YLSFRRVGGCSRSELDTWAAPATggLLGSIRGTL...QSLTMWSASSDINLQP..QPYTHRQLLAGIN.LLGTTRILNTLVEELKHQAQAGSGdfALDIVATMVCAPiPESFAVeQNVVHSVDPAKEAMPrcAILTLRDALSILH
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 71.30| 22| 300| 328| 352| 2
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328- 352 (34.13/28.81) ESSRTMFLFRSFLvnkLPAFFAAMI
627- 648 (37.16/22.96) DQSLGAYLLEPFL...LPSLVVALI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 292.99| 81| 88| 87| 172| 3
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24- 82 (65.71/42.12) .......................DVEEFQDL.....TQLMQRRVPlKENEL...LDL.LFETRSTVnVTWDPLLPVYVEG..LCKARQVKA.AS
87- 172 (124.85/102.55) LLAH.STIRKGPEskCKTSTFMTDIKVIQDVMLsisTGAIPRVIP.EAAEL...YDA.TAEWILAV.VEWYNQTASEQNGGATTSADALSL.FE
177- 259 (102.44/71.17) LLAAlSGTNKGLE..MLSSDHYKDLRTKLGRAL...TAYIPLCVE.VSLPLrqrLDAlQKEFNL.....FGDQTSKQLDQSSMQSINVTSLqFE
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