<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32481

Description Mediator of RNA polymerase II transcription subunit 14
SequenceMTIELGSHAVMSENSSSQAHRKRQEADGSMVNNQSPAAKRKDAVVPSVIESTFDVAPPPIPHVEINQIPLSLLMRNLTVFTIQELSQFMKTNVHINPAEPSTTKKLHFLHMIIFLRNQFLKLYVLIKWCRTIKNNNFHTMIDLLNWFRLTNVVVNNCIWALKGSLTAMANAKLPNVDLVTALEVLSLGRPNLPRHQFKLSGEEDPYQLSGGMTKVPPKVLLHKLRDMNLSISIKIALMDVPDQFRNYRCKNGRIYITVPDEYEIQLATTDYRSPLFFVDMNFLFCKQGLPLNKMRLEKMVNEFLFKSSKPLISLHKFLRKYVLTLQLYMIYVELVELEESGKFSGGHLVHRYDSKKSIISIRYWLHSKMGKRSKITIGVDRRTENLILKWDNEFAVQSKRMTVIYTNILSNLESILDEIMFNHSHIIRANLLSKGVFLEDEENPEALLFQIPTTCQSLAPIQLKIDLISGVFYFKNPTPLLLSYVGQINRAETAEHLTNVLQKLKRDKISHVLRNMFEKTGWVCSKVIKLDRPIATQVSADSGNSVGAKSGSSSTDGDSKYASLLQDDIFIRLSSWPASWYLILTVVSSNASCVVEKRIGKVVSVKGKWKLSYLGNSSVTSSKLETMTYQKVLYLQKTILHRIVNHMIIDSLNQLKISNKISIGDMLSSLPKYVVNGTHQHDGNQSARTNSTDYTSIITLELESFLEGSKALNNILESSMFMRIDYHNSEISLFGKFKRDTMMIKCKCDELLIHFVPGESLAFYLSEKFTNLNMIVDYLIKFRQKLMQLVVLTDVVERLHKNFASEDFRIVALKPNEISFKYLKNNSDTQDCTISIVTNDQMVENLTVQLSPSNPQHIIQPFIDSGRMDYQFIFNYLQFTSSLFTVLETILKQQNSPSSYTMVALGLHNLCEYQLVYHNPEVASKITLIIELKNVSHNGSKRVQFYIHFSDEERISTKSMAYPLVHQVRNQVFMLDPKDPPANAKNKKFHGAVRLVDGISCDPSNIEVILLEIHDILKMDSNLPAAPNGIQKAPSAKISTAS
Length1042
PositionTail
OrganismZygosaccharomyces bailii (strain CLIB 213 / ATCC 58445 / CBS 680 / CCRC 21525 / NBRC 1098 / NCYC 1416 / NRRL Y-2227)
KingdomFungi
Lineage
Aromaticity0.08
Grand average of hydropathy-0.136
Instability index38.17
Isoelectric point9.13
Molecular weight118712.36
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32481
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     195.11|      61|     198|     712|     777|       1
---------------------------------------------------------------------------
  712-  777 (98.42/81.36)	LNNILESSMFmridYHN....SEISLFGKFKrDTMMIKCKCDELLIHF.....VPGESLAFYLSEKFTNLNMIVD
  907-  976 (96.68/65.23)	LHNLCEYQLV....YHNpevaSKITLIIELK.NVSHNGSKRVQFYIHFsdeerISTKSMAYPLVHQVRNQVFMLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     158.12|      49|     196|      69|     125|       2
---------------------------------------------------------------------------
   69-  125 (74.48/76.32)	PLSLLMRNLtVFTIQELS.QFMKTNVHINPAEPSTTKKLHFLHmiiflrnQFLKLYVL
  274-  323 (83.65/62.01)	PLFFVDMNF.LFCKQGLPlNKMRLEKMVNEFLFKSSKPLISLH.......KFLRKYVL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32481 with Med14 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ELGSHAVMSENSSSQAHRKRQEADGSMVNNQSPA
4
37










Molecular Recognition Features






MoRF SequenceStartStop




NANANA