<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32473

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMNSVGQNLVSWSKTGLIAYGDSKSSDGNLCVTFLEVINGTNWRFHPVQKYIIHPQLHESALTNGLSNNGSQHSGNVLAGNGPSHTPSVTGGGSEKHPHIFFYNVSSVHWNNWFSLPGDMLAVCDELGNMTMLISGQSPEGPSTIEKLTMLFQDNVYKIHNQIVPLSPKVPPACKLERKQTKKEYHTTILSFHWLSSSKPVISSQFCVFDISSNTHRNKAQQIPPFGVFHPPFMKYACMAVRKNGQIDFWYQFSNSKDHKKITLQLQSSQTQRTKELDWLEFAKITPMNDEQCMLISTYSKYFKRLSFYKFHINWNVNASNPTLLNDPSLKIYHILDTVPDSIDDEGRILQLSHLHALSKSPVEKNPFPEILLIYDISGSKKSLLKRFRLVQSQLTPDFVSILQSASPSANGTGTQPLRSKHFNLLETGNLCLPDRVVYVTSEMLDGFLTFYLQNGSMSTYNRNDWKLESERLQNQNAQGKFRDMITSILSAGLQLPKVPPCAAVEWLRVSPSLGGVIVKLEEKQNPQFYAIQDRDCTNAAMDATNATTLAFGFVASTHRQLSSEDLSIACKTHVARLAQLDEKRARNFITSLIACIYSFFNVTPDAPKEIMDKMISSRPIQKTMLLQLELGCSFGQSNVYEMARVVMSLRNVLFAFNGVARNLHFAIEQLSNSSLQQPNGKSFQTSFSKQDLVHSLIPIAKWFVKFVTYLIQEVILLINDPDDKQNTLVLGVFGARMPRTLILSILNEIKKVTQIVTKFPETSYPVLNESSKFLKMVLGESSVNFEKFETFLVDVNNKFSAFNEQQPSVLREPSILVKAEIPSDVSKMGEFLLSYSNNAVISHVNATSVYFSDTSELRISNEEFFQPQLLKLLQPLEKGLVVDTDNLPEPFKTSRSFCQIKYDAISFDHFTEDELADRKLKRCCRCGCVTRAGYIVSGSKTIVSTSIQTKRWPTMYTRICICSGFLYELSD
Length971
PositionTail
OrganismZygosaccharomyces bailii (strain CLIB 213 / ATCC 58445 / CBS 680 / CCRC 21525 / NBRC 1098 / NCYC 1416 / NRRL Y-2227)
KingdomFungi
Lineage
Aromaticity0.10
Grand average of hydropathy-0.218
Instability index46.37
Isoelectric point8.56
Molecular weight109542.19
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32473
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     165.85|      42|      48|      79|     123|       1
---------------------------------------------------------------------------
   53-   77 (25.45/ 9.66)	.......................HPQLHESALTNGLSNNGSQHSGNVL...
   79-  123 (76.91/55.49)	GNgpsHTPSVTG....GGS..EKHPHIFFYNVSSVHWNNWFSLPGDMLAVC
  127-  173 (63.49/37.61)	GN...MTMLISGqspeGPStiEKLTMLFQDNVYKIH.NQIVPLSPKVPPAC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     173.42|      56|     181|     637|     697|       2
---------------------------------------------------------------------------
  637-  697 (88.61/64.04)	SNVYEMARVVMSLRNvlfafNGVARNLHFAIEQLSNSS.LQQPNGKSFQTSFSK..QDLVHSLI
  823-  881 (84.81/50.95)	SDVSKMGEFLLSYSN.....NAVISHVNATSVYFSDTSeLRISNEEFFQPQLLKllQPLEKGLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.82|      40|      47|     383|     422|       3
---------------------------------------------------------------------------
  383-  422 (67.43/38.15)	LLKRFRLVQSQLTPDFVSI.LQSASPSANGTGTQPLRSKHF
  432-  472 (65.39/36.79)	LPDRVVYVTSEMLDGFLTFyLQNGSMSTYNRNDWKLESERL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.31|      17|      42|     759|     775|       4
---------------------------------------------------------------------------
  759-  775 (30.50/21.82)	FPETSYPVLNESSKFLK
  802-  818 (29.81/21.13)	FNEQQPSVLREPSILVK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32473 with Med16 domain of Kingdom Fungi
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