<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32455
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDEEMMDDLFGDGGGLSIPSRPPSKELYQRLDDLRRGGCCQGIAWSNWGCIATIASSGAILELRNLRCHPEDANLDGGPLKHLCWSTSGSELAVIDTAGRVNILSLFSSLNKPTLHRHCQMDPIDELCGIVGCHWLTPAPYQANRPAQLNGPAVKEGSSYKYETSAAPVYGPFHPVLGKSALVCVTTNGTLRIIYPQVNGKYAEVHTELESIVSSDDLITHAAIGSDRNQTLLIAFATTSKQLRVVRAVIDWGQQKPTERGAQPVPQQPLNPSIRTRHVAVTSWLHDSPSDNINSLNTESSMMQLSHLEFLPSSLEPGGRLTPPTIVAVRSHLPPSMAHYNQEVHTVVDRWEIREKMQTVHPAFEQLSSRRNSIGSPPQAMSFLKKLDSFTVNKILLAIQPINLGRVLFFMYSDSSVEYRDRTTMAETFTDNDLDRVWHLSQIGFTYPEDEPCLQVALSPSYCSMVQIRNDGKVKWKQLDYAIGDIGSDNSDPQYAAVVAALALSCSSAVMRNVAYDDLLPIAAKYSNTNLTFDWLVELSSVLKVPLDYSEEQHADLLIRNSTIQLFHSIQSSLGFRGEFEPRSFPGKLSWLVLQLRNIVVLVTMAANLGVRGDGPNPNEKTSPLDDPEVINALAGSVRWTLDLMAWLTDTLLTLSSTLPPGMDLTNVKGFSLPELHAHLVKTNTVALHLLLSSSTRGFLTAICRRLSHLDWIARRAITPSAGNTGSGTPNTQGSNPDKQPSPALRNAYLHIATITTNTILRIKTIDTLLSALTTSIKDVYSTILPKSQTSDKSTDKANEKARNAYEIKIAFGGPFPEAFKPIIVELFRADGLLAAVREDIEPAKLFFADFSLLEVNEDKASLAKRKASGMTMDCFRKTWLPNPKKGMDLVEGKQVPRWRRCARCAAVMVDVLTERRALQWLIMQQRRCFCSGYWNTVAAGETVA |
Length | 945 |
Position | Tail |
Organism | Glarea lozoyensis (strain ATCC 20868 / MF5171) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes>
Helotiales> Helotiaceae> Glarea.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.189 |
Instability index | 45.49 |
Isoelectric point | 6.65 |
Molecular weight | 104387.02 |
Publications | PubMed=23688303
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP32455
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 139.79| 46| 55| 706| 753| 1
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706- 753 (76.63/46.10) RLSHLDWIArRAITPSAGNTGSG.TPNTQGSN..PDKQPSPAlRNAY.LHIA
762- 811 (63.16/30.98) RIKTIDTLL.SALTTSIKDVYSTiLPKSQTSDksTDKANEKA.RNAYeIKIA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 114.89| 40| 224| 585| 674| 3
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260- 337 (53.44/12.83) RGAQPVPQQ...PL.NP........SIRtRHVAVTSWLHDspsdninslntessmmqlshleflpsslepggrltppTIVAVRSHLPPSM
612- 663 (61.44/106.51) RGDGPNPNEktsPLdDPevinalagSVR.WTLDLMAWLTD.....................................TLLTLSSTLPPGM
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 45.02| 10| 38| 37| 46| 6
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37- 46 (22.73/17.28) GGCCQGIAWS
77- 86 (22.30/16.79) GGPLKHLCWS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 58.19| 16| 353| 17| 32| 7
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17- 32 (29.46/18.42) SIPSRPPSKELYQRLD
373- 388 (28.73/17.77) SIGSPPQAMSFLKKLD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 60.50| 20| 119| 552| 578| 12
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552- 573 (26.59/39.00) EQHADlLIRNSTIQLfHSIQSS
675- 694 (33.92/19.47) ELHAH.LVKTNTVAL.HLLLSS
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