Description | Mediator of RNA polymerase II transcription subunit 17 |
Sequence | MANPPGAPGDPGPSTLFGERDPVFRPWPLPPKQPSNIADFVSRLKAQGIEFRELSDEGLRKQIEEEKKQAADGKNGANATDSDNKATKSKSANTDEAIERPKGREAMMQRRDEVIVALMNAVQSGAICLDLVSLLLSKDRPTQALQTLSNVRDKVGIGTLSAGRIANATQAARALQIRSRGGALSAADLQNLDETTRTNAERLLEHKTECVGWQLLAMDRASDMLQVAQKRLHTQMRREKRYWSEILAVQERGWCLSRVPGQRRVLRVKFGFSEAAPDLRPLGFAPMHRAKGKHVALDLSFLGPPAAIVLTLRKRDGSSDEIGRSHIPTRLPSSAALEDRILEARNTIFAKELWRELGREVRLLVSHDVVFRDNKIIFPAGAQTQGIVSLETLRLKPTAVDDSSAAATPSPKLDDMAEAICTSLHLLLTHGHREHYNKRSQPALPVDITPSPPAYCMLRTVVSNLKYEMALKHIAMCVSSVCGILHGVGQTGARFTLYERPITPAVMSMPSTATGRAGVQPSASESLCSAFLTQREFSFEYIINAHTRILIRSRTYIAPIKVQYLVQLLPPLPGSGSAAKNPLLDTFPPADGYSTLHDVATYIQDATTHVLAERALAIARTWEAKSGNGKDSVWAMTVDGMAIRHTKSASWTLRLGMAPLPVASAAESSRGKLGKLEEEDAEIYQIDSVVDGADLPPVQVDSPLEQLPPFELRVDASWPHESNDSAVCKTWAWSAASLQQAAQGSVDLESIIEGCISATLKPKTSSQVN |
Length | 769 |
Position | Head |
Organism | Ophiostoma piceae (strain UAMH 11346) (Sap stain fungus) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Sordariomycetidae> Ophiostomatales> Ophiostomataceae> Ophiostoma. |
Aromaticity | 0.05 |
Grand average of hydropathy | -0.290 |
Instability index | 46.96 |
Isoelectric point | 8.53 |
Molecular weight | 83901.78 |
Publications | PubMed=23725015 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364140 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP32435 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 176.89| 52| 55| 123| 176| 1 --------------------------------------------------------------------------- 99- 133 (41.48/24.28) ...ERP.KGREAMMQRRDEVIV.................ALM.............navQSGAI.CLDLVS 136- 191 (70.64/50.47) LSKDRPTQALQTLSNVRDKVGIGTLSAGRIANATQ.AARALQ.............irsRGGALsAADLQN 192- 259 (64.76/39.57) LDETTRTNAERLLEHKTECVGWQLLAMDRASDMLQvAQKRLHtqmrrekrywseilavQERGW.CLSRV. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 90.36| 25| 38| 408| 432| 2 --------------------------------------------------------------------------- 408- 432 (44.79/29.26) TPSPKLDDMAEAICTSLHLLLTHGH 449- 473 (45.57/29.90) TPSPPAYCMLRTVVSNLKYEMALKH --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 43.67| 12| 372| 275| 287| 4 --------------------------------------------------------------------------- 275- 287 (19.49/14.83) AAPDLRpLGFAPM 649- 660 (24.17/12.90) ASWTLR.LGMAPL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 129.53| 43| 296| 18| 63| 5 --------------------------------------------------------------------------- 18- 63 (63.57/53.39) GERDPVFRPwPLPPKQPSNIAdFVSR.LKAQGIEF.RELSDEgLRKQI 317- 361 (65.95/39.83) GSSDEIGRS.HIPTRLPSSAA.LEDRiLEARNTIFaKELWRE.LGREV --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) NIADFVSRLKA 2) TLFGERDPVFRPWPL | 36 15 | 46 29 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab