<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32433
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MTATMAHSMTLAGSSSPVASVRNKSGGSYVYVPNIYHAQQWTKFIRRCLRTRLDIERFAKFAPIQRRRHPISPVILVDIFLRPSARIQPQLRVSSSNVCEAPIDPRIPAYLKILLQLGYVDVISILQGLYRYSSSQAARREAAVAAAAIEEQSKNAEITTDGGNYSPVGSKKNSASGAGSVIWGSSFYNEETMFYRIARAVRQENAIRGKKSALAAATTMAAWMQLFVAAASSFATATLVSTDLSEQAFKQDGTESCRTAFVLLLLAVLEDPVVLDTLKQPYAKAARRALSQTLPSFMPIVSHSSAVAVARLDQFHSGFLSQFDQDKEKKEEVNDNIHDLLDSTVGLQNLAIPELPISNSRAGLYIYLNAALVGRPLVDDASIFAYLHNRYQGDLQSTAIDLILASFDVLANAVFRREGQTSAHLLRSYLINKVPVLLASLAASPLYPFDSQFCISEALSRVDTNAFPTMSSMFDDNQNANTFTDSVRQDFCFACCLHGLIPESSIETLLGEMTYQSLPAGGRFTKQSLVQQCMGDYGQIDVLIGQLDSMDGNVGAVSQALVEILGHLCRTRDTATLKTLCNNLVKKPLAFDVLLLFDRPSAILYPLCQLLDGWRYEDDQSEYQPVYEEFGSVLILLLAFVYRYDLSIVDLGIQWSADSFVAKVLSVGPQSRTLVELSDQERENLGSWIRGLFDTEAGGLSDDLMASCPPQQFYMLTPTLFQQIIQATSTGALKEEALKIGIEYLVDTFLLPSLVTALVYLSSALKVDKPVEQKAIIRILQLILQPASISSEASLMLTALLNIVAKPLEHALHIFQAQDPRNEDIDPLLNALKQSIPRSRRTAAAEHNELVNWARSSAGSSGKNMSSSGRVPTAGGLYTAVCQTMQGFVQWSLHPGANAMPTSYTHRQFVAGLGLIGAPRTLQLILDEVQRQTEAGNGSVVYDVACALICAADVTNEPSPDSLYVLVDGESSSDNGENGDADGTHNERAVAGTVVANTAAVQRRITLRQFLTFKAEEWKKIQRSRDPVDIAMAEAIVRLHRKVEAQMAPPPAPPPPAQSDLSAGLDAAVAAAAAGLDDAAMDMVAAAAGVPGQDDGMALDGVDLTSLQGGGVDGGPGTAGPSGSAGDLGDLGDLGDLGSLNGLGDLGDLSDLGMGGSGGDRSSQDLGDQSMFGEIDLLNSWMNLQ |
Length | 1185 |
Position | Tail |
Organism | Ophiostoma piceae (strain UAMH 11346) (Sap stain fungus) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Sordariomycetidae> Ophiostomatales> Ophiostomataceae> Ophiostoma.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.009 |
Instability index | 51.02 |
Isoelectric point | 4.96 |
Molecular weight | 127663.35 |
Publications | PubMed=23725015
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP32433
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 143.27| 33| 36| 1103| 1137| 1
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1060- 1095 (35.19/17.34) DLSA....GLDAavAAAAAGLDDAAMDMvaAAAGVPGqDD
1103- 1137 (54.03/38.26) DLTSLQggGVDG..GPGTAGPSGSAGDL..GDLGDLG.DL
1145- 1175 (54.06/31.40) DLGDLS....DL..GMGGSGGDRSSQDL..GDQSMFG.EI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 113.79| 35| 36| 842| 877| 2
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842- 877 (56.54/30.52) TAAAEH.NELVNWARSSaGSSGKNMSSSGRVPTAG.GL
879- 915 (57.25/27.48) TAVCQTmQGFVQWSLHP.GANAMPTSYTHRQFVAGlGL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 142.35| 35| 36| 62| 97| 3
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62- 97 (57.07/34.34) APIQRRrHPISPVILVDI.FLRPSARIQP..QL....RVSSSN
101- 136 (54.52/28.63) APIDPR.IPAYLKILLQLgYVDVISILQG..LY....RYSSSQ
588- 620 (30.76/13.00) ........PLAFDVLL.L.FDRPSAILYPlcQLldgwRYEDDQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 117.27| 37| 40| 371| 408| 4
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371- 408 (58.86/41.32) ALVGRPLVDDASIF.AYLHNRYQGDLQSTAIDlILASFD
413- 450 (58.41/36.52) AVFRREGQTSAHLLrSYLINKVPVLLASLAAS.PLYPFD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 66.80| 23| 38| 757| 781| 5
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757- 781 (32.48/32.70) ALVYLSSALK.VDKPVEQkaIIRILQ
793- 816 (34.32/26.51) ASLMLTALLNiVAKPLEH..ALHIFQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 67.03| 20| 38| 919| 938| 6
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919- 938 (33.19/20.42) PRTLQLILDEVQRQTEAGNG
960- 979 (33.85/20.98) PDSLYVLVDGESSSDNGENG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 74.20| 24| 32| 506| 531| 8
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506- 531 (35.47/27.33) IETLLGEMTYQSLPAGGrfTKQSLVQ
540- 563 (38.74/22.82) IDVLIGQLDSMDGNVGA..VSQALVE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 86.28| 27| 38| 168| 194| 9
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168- 194 (46.62/31.25) VGSKKNSASGAGSV.IWGSSFYNEETMF
207- 234 (39.66/25.44) IRGKKSALAAATTMaAWMQLFVAAASSF
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