<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32393
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MDSRAAAAEAMRSAIEYWSQFVARSISQRLDTEKFENYVRLVHDQHPLPPALVADFFLRPQPSNDNSLDPRIPPYLQVLTRLGYVDAPSILKALYKYSSLHAYAQQPNAHEGRENEKENGKSDDKEKDENQQKITRWKSSYWAEEVLFYGITKSVVEGKAIRDSKTALDMTRIISKLMVLFTTAFAADMIEQLHTAQVRDEMESSRAALVALLLRMCENDILVGALVPQITDKLEQFRTEILACSDPADKKKQATNAAMDELLDSAVGLDNFVVADIPVSNTRAGLYIYLNAALIARPLLDDHALFSYMSNKYQGDIQSSAIDLILASFDILANAVFRNEGQKDAHLLRSFLINKIPILLYQLLPPGFPGTSAEFCITEALSHVDTSLFPTASLMFDESRNNNPYTESIREEFCAACVLHGLVQREHVERILGEISLSYEPSLQKHSKDKLVQDCLSDTEKIQGLVRELDKMDGNVGAVCQALVEVLRQSCHNKETMSLKVLCSQLAAKPQSLDVILLFEKLPNILEPLCQLLDNWRYEDDQEEYQPVYEEFGAVLLLVLAFTYRYNLNAVDIGIASPDSWVAKIIGRGHIGRQCNELTQRENDHLNGWIHGLFDTEAGGLGDELMSSCPPQEFYLVVAPLFQSIVVAYTHGYLNDESLKGGIEYYLWIDQKEQKSIIKILQLILLPSSISGEASTMLSSVKNLIAKPLEHALRTYQRRDPQNQDIEPLLRTLRDSIPLSRRTGGTDLNELESWTVTPPTGLSSAIKLTTQGLVHWSMHPAMNSMPTSYTHRQILAALKIMGPKRVLHVILEEIRQHTETGSASIVYDVAISLICAPDAAKDAPAVVDANGNMLPSVQRQRSLRDLLKVEAEGCRKLQKKDPALAEIVVRLHRRVEAQMIIPQPPGMLQTAEMSLNLDGDTAALGDAMAAAASGVQDNMSVDNLTLDVSMDPSGDAAMFEGFDTQDMDNFDWDDIGNAF |
Length | 979 |
Position | Tail |
Organism | Gibberella fujikuroi (strain CBS 195.34 / IMI 58289 / NRRL A-6831) (Bakanae and foot rot disease fungus) (Fusarium fujikuroi) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Hypocreomycetidae> Hypocreales> Nectriaceae> Fusarium>
Fusarium fujikuroi species complex.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.195 |
Instability index | 44.82 |
Isoelectric point | 5.00 |
Molecular weight | 109210.21 |
Publications | PubMed=23825955
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP32393
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 42.10| 13| 20| 707| 719| 1
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707- 719 (24.12/12.99) KPLEHALR...TYQRR
727- 742 (17.97/ 8.07) EPLLRTLRdsiPLSRR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 127.41| 41| 155| 428| 469| 2
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428- 469 (64.60/51.79) VERILGEISLSYE.PSLQKHSKDKLVQ..DCLSDTEkIQGLVREL
582- 625 (62.80/45.21) VAKIIGRGHIGRQcNELTQRENDHLNGwiHGLFDTE.AGGLGDEL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 125.88| 38| 153| 338| 376| 6
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301- 342 (29.12/12.32) DDHALFSYMSNKyqgdIQssaidlilasfdI..LANAV...............FRNEGQ
344- 381 (67.05/47.62) DAHLLRSFLINK....IP............I..LLYQLLPPGFPGTSA...EFCITEAL
382- 414 (29.71/16.01) .SHVDTSLF........P............TasLMFDESRNNNPYTESireEFC.....
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 90.85| 27| 589| 64| 94| 7
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64- 94 (42.63/39.70) NDNSLDPRIPPYLQVLTRlgyvDAPSILKAL
655- 681 (48.22/33.06) NDESLKGGIEYYLWIDQK....EQKSIIKIL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 48.40| 15| 32| 197| 211| 8
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197- 211 (23.92/16.10) QVRDEMESSRAALVA
229- 243 (24.48/16.64) QITDKLEQFRTEILA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 124.93| 39| 439| 471| 540| 9
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494- 540 (52.70/82.97) KETMSLKVLCSQLAAKPqSLDVIlLFEKLPNileplcQLLDNWRYED
936- 974 (72.22/34.53) QDNMSVDNLTLDVSMDP.SGDAA.MFEGFDT......QDMDNFDWDD
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