<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32389
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MPLILDNPMPVELNDVDDLFGDGVGLSLPARAQSKQLQQRMDDIRIRGCYQTVAWSRTGSIANITPDGQNLELRFLRRSPDDGSWDLSEPTTCPFVKGLPTIPIVHLVWAGTSSPDLAVIDAVGRVSIVSFSISLNHPFPQRKWDADPTDDVHTVVGAYWLNVSPPNQQASYNVMYGPATKHGNGYTYESSFVHAGGPTHPSPAKSALLTITTHGVIRMFWSQNTNRLEETTMELESISASDELITHASFASEKKHLLLAVATTSKQLKLIRIEIQWGQASQADKATGRPPGNLSPSLIEKHLATTNWLQGGPGDSSLDISMIELSHLEVIPSVVDSTGKNTTPPMVVTARSRTPTESSYQGSQSVVDRWEAIEQKQNLPSAYEQLGGRRNSISSELPAVTQLQKIAPVTANKVVVAFQTTSFGKILVLAFADGTVEYRDRLTFEELYTTQELNKVQNLRQIGWTFADEGPCQQVAFSPTFCSMVQMGEDGKIKWNKLHYPMGDIGNSMQDAQYCGSIAALTVTAAPSMFYQNNYDDLLAIVRPYTTKKRFVQDLVTELIRILKIQIDYSEEIHHDSLVRNGSLQYCLSIMNALGFRGDFHPRSFQGKFSMLFLNVRNVVVLITIASNTPVTVREKLSPLDDPEVIETLVGCARWALDLIAWLMDCLFELMNDNHFQELLTRERFHELTPYLHEKNNVAFHFLMSSSSRGFLSAICRRLAHLEALSGRAIEFYRKQSAVVEGVAGGRAAPQLQQAYQAMQQVTSSALVKVSEVETLLTGLSNEIRQAYQIFLPSLAKSQNNQTQGKQLDMAMKAARVQMELSILLSAAPPAPFLQIIKKFFNTDLPAFRNTVDPGRLFFANYDLLEVEDDEHSLAAKKARGMVYVDVFKRMQIRPSPDKQWRRCSRCTAVMEDVFGSRSGFTFVLGQQRKCSCGGQWTLLPKGHVS |
Length | 946 |
Position | Tail |
Organism | Gibberella fujikuroi (strain CBS 195.34 / IMI 58289 / NRRL A-6831) (Bakanae and foot rot disease fungus) (Fusarium fujikuroi) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes>
Hypocreomycetidae> Hypocreales> Nectriaceae> Fusarium>
Fusarium fujikuroi species complex.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.211 |
Instability index | 45.78 |
Isoelectric point | 6.45 |
Molecular weight | 105336.87 |
Publications | PubMed=23825955
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP32389
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
5| 279.35| 115| 230| 26| 146| 1
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26- 105 (113.24/65.79) ......................................................................................................................................................LSLPARAQSKQLQ.QRMD........................................................................................................................................................................................................................................................................................................................................................................................................................dirIRGCYQTVAWSRTGSIANIT.PDGQNLE..........LRF.LRRSPDDGSWDLSEPTTCPFVKGLPTIPIV
107- 146 (22.09/14.53) LVWAGTSSPDLAVIDAVGRVSIVSfSISLNHPFPQRkWDA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
257- 334 (71.46/34.73) ........................................dptddvhtvvgaywlnvsppnqqasynvmygpatkhgngytyessfvhaggpthpspaksalltitthgvirmfwsqntnrleettmelesisasdelithasfasekkhLLLAVATTSKQLKlIRIE..................................................................................................................................................................................................................................................................................................................................................................................................................................IQWGQASQADKATgRPPGNLSpsliekhlatTNW.LQGGPGDSSLDISMIE....LSHLEVIPSV
335- 372 (30.56/ 7.92) VDSTGKNTTPPMVVTARSRTPTES.SYQGSQSVVDR.WEA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
784- 834 (42.00/16.59) ........................................................................................................................................................................ieqkqnlpsayeqlggrrnsisselpavtqlqkiapvtankvvvafqttsfgkilvlafadgtveyrdrltfeelyttqelnkvqnlrqigwtfadegpcqqvafsptfcsmvqmgedgkikwnklhypmgdignsmqdaqycgsiaaltvtaapsmfyqnnyddllaivrpyttkkrfvqdlvtelirilkiqidyseeihhdslvrngslqyclsimnalgfrgdfhprsfqgkfsmlflnvrnvvvlitiasntpvtvreklsplddpevietlvgcarwaldliawlmdclfelmndnhfqelltrerfheltpylheknnvafhflmssssrgflsaicrrlahlealsgraiefyrkqsavvegvaggraapqlqqayqamqqvtssalvkvsevetlltglsneIRQAYQIFLPSLAKSQNNQT..QGKQLD..........MAMkAARVQMELSILLSAAPPAPFL.........
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