<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32381

Description Uncharacterized protein
SequenceMGVSSTARLPSLGAQSIPPLFSHLQHSSNAKVVARWSITIRSFRAVPVPTNAWPSPNQYDSNFSLTSLDDDPSSSNVPNAASASTSSAAAGGSTLGLGGGAGSSASGAPPLTKPRTMWQVQLSDHPGVVFVVVEDTGRASRAKVWRDWELSTKKWRKQKRREIAARRKKEEQTEAEKPTMQGENGNSIVAEERADKIETEASGVPMDEDAPSSLDPQGDARIDAVSTESQLPSGPSADSQPSEAPAPAGEQTEQESVEPAGPKPKLRLPSHTRYTVSAITSSMAAMLSGLNLPPPHGAPVGTAGPGAWVPRGAAVSIEGLVLEINSQSLNALPGISPALASLSNTDDAGVAGSSGGVDWRVRVGSVVGGGRRSAGAIVEAEFLPASTISPTSKFMNDFLFSLFPAGLVPAQPSAPVAAVGMPNVTGNAGAPQAGSGMAVPGVNNPSLGLASATNGNITGAVGGASGTEFSYTIGGGAGATPPNRNLNLPVVSDQLWEEVVPRSGEGWVRRISKRSRKMAIAARTLRRQRKNAGESSSGPNGRMAEVKDAQTDAFGWHMFGSDDEADPKATAPINGHSLDEDNESLYSSDSEVEATPDSASNAVACAGGLTGTAVTMQQGDQGEDDDDEDDDRPLGAPAWSSSNRPAAAASTPNVVPPAAVAPSVAKKEHTVQLIFQGLQSDADDTEGAEDGWSGIERGRRIAFQYVQMLRAEGII
Length715
PositionHead
OrganismPseudozyma hubeiensis (strain SY62) (Yeast)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Pseudozyma.
Aromaticity0.04
Grand average of hydropathy-0.405
Instability index53.80
Isoelectric point4.97
Molecular weight73846.61
Publications
PubMed=23814110

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32381
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.77|      21|      49|     241|     261|       1
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  211-  234 (29.19/11.45)	PS......SLD.PQGDaridAVSTESQLPSG
  241-  261 (37.19/16.68)	PS......EAPAPAGE....QTEQESVEPAG
  412-  436 (27.39/10.27)	PSapvaavGMPNVTGN....A..GAPQAGSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     165.54|      43|     194|      72|     115|       2
---------------------------------------------------------------------------
   72-  114 (76.16/25.69)	PSSSNVP.................................NAASASTSSAAAGGSTLGL....GGGAGSSAS....GAPPLTKP
  269-  310 (49.71/13.69)	PSHTR...................................YTVSAITSSMAAMLSGLNLppphGAPVGTAGP....GA...WVP
  404-  482 (39.68/ 7.98)	PAGL.VPaqpsapvaavgmpnvtgnagapqagsgmavpgvNNPSLGLASATNGNITGAV....GGASGTEFSytigGGAGATPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.54|      21|      24|     163|     183|       4
---------------------------------------------------------------------------
  163-  183 (34.42/25.10)	IAARRKKEEQTEAEKPTMQGE
  189-  209 (34.11/24.80)	VAEERADKIETEASGVPMDED
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32381 with Med20 domain of Kingdom Fungi
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