<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32380

Description Uncharacterized protein
SequenceMSGPSSSIAGPSTTPEVPLTIEPVHIYHTPQPTQTHHPSSLDMFDREPALHDITPSGTNIFQPRKPAAAQLSEDVLRLWSERGDFSRFQTSSLLAKRPHSPSSSSSGDDDSPRPALEQQDELTRGGNEKIGGTIAESEFVKLRNTVLGNLDVAHFNSIHAHQLLGMLIKQHRSTIPSNTLAGGGGGKMGSPAPSVSGQSARSGSTTAAVTPAVTKAPLGIFGHLNAQKAEEEFILDPLAISLSRTSLNPNTTRKKEKEEEDEEEDFDVDPTSAEYALKQASKEQESAPGYRENQLKEFKIVLETKRKAMESAAELLSAAAGELRSGQGANRERWRGLIGLYGRGWGVTPGRPLLDVERFGVAGGDDEEDGEVVEGGESGEGKEVKSKKKDVKRKEGKREKATAAGLQGFGTPIITSDGKVKEEGARDAWIGFGLPEAPIELRRRSLAYWADLPSNPSDPAGLTAEEVKRKLVFPDRMHRRLRVRFVLWPPSSDGKHQQDDRIEWSSDPIPSKQEAAPVALGHVLDQELQQASREATDELVFGDVVAQARLLPPTFGVRLTSSSVRIVLTKRLDCVVELVPTGKDDGPTEDSSQKEAGEPSREARYAPHAALLLAFLRMGPLRKYHAFVSATHEARKADAAARAAAIKAAALSVPKKSNAAGSAEASAASKTEAATGGKGGVGAGGRSTSAALCKLDSVGPVLVGLHYWSFVHRLGSVLRDVQEKALQRGLKVSIQLIPLTVPSTAGGSASLAHLTSTLAQMFDATASHPYPTTPNTERNAANIHSIYTSPDQTALSALKGHAKIFVATQSGGARVAGNRLVCTCSFAQPSLLSVQFSGGRMGKGVALTNKPLAVNLDTLRELVEKQLGQL
Length870
PositionHead
OrganismPseudozyma hubeiensis (strain SY62) (Yeast)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Pseudozyma.
Aromaticity0.05
Grand average of hydropathy-0.441
Instability index49.95
Isoelectric point7.39
Molecular weight92863.27
Publications
PubMed=23814110

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32380
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.52|      22|      22|     647|     668|       1
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  626-  645 (23.08/10.17)	..AFVSATHEARKADAAARAAA
  647-  668 (32.77/17.87)	KAAALSVPKKSNAAGSAEASAA
  670-  691 (33.67/18.57)	KTEAATGGKGGVGAGGRSTSAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.98|      12|      15|      38|      49|       2
---------------------------------------------------------------------------
   38-   49 (23.69/14.06)	PSSLDMFD.REPA
   55-   67 (19.29/10.14)	PSGTNIFQpRKPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.51|      24|      32|     355|     384|       4
---------------------------------------------------------------------------
  355-  384 (29.79/27.18)	DVERfgvAGGDDEedgEVVEGGESGEGKEV
  390-  413 (40.72/19.66)	DVKR...KEGKRE...KATAAGLQGFGTPI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     242.05|      66|      67|     470|     535|       6
---------------------------------------------------------------------------
  416-  457 (31.11/11.08)	........................SDGKvKEEGARDAWIGFGLP....EAPIelrrrSLAYWADLPSNPS....
  470-  535 (115.17/59.26)	KLVFPD..RMHRRLRVRFVLWPPSSDGK.HQQDDRIEWSSDPIPSKQEAAPV.....ALGHVLDQELQQASREA
  538-  603 (95.77/48.14)	ELVFGDvvAQARLLPPTFGVRLTSSSVR.IVLTKRLDCVVELVPTGKDDGPT.....EDSS..QKEAGEPSREA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.91|      10|      15|     270|     279|       7
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  270-  279 (17.31/11.92)	PTSAEYALKQ
  288-  297 (18.60/13.44)	PGYRENQLKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.15|      25|     549|     193|     217|       8
---------------------------------------------------------------------------
  193-  217 (43.13/22.61)	PSVSGQSARSG...STTAAVTPAVTKAP
  742-  769 (39.01/19.79)	PSTAGGSASLAhltSTLAQMFDATASHP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32380 with Med17 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GDDEEDGEVVEGGESGEGKEVKSKKKDVKRKEGKREKATAAGLQGFGTPIITSDG
2) MSGPSSSIAGPSTTPEVPLTIEPVHIYHTPQPTQTHHPSSLDMFDREPALHDITPSGTNIFQPRKPA
3) QTSSLLAKRPHSPSSSSSGDDDSPRPALEQQDELTRGGNEKI
4) RTSLNPNTTRKKEKEEEDEEEDFDVDPTSAEYALKQASKEQESAPGYRENQ
5) TIPSNTLAGGGGGKMGSPAPSVSGQSARSGSTTAAV
364
1
89
244
174
418
67
130
294
209










Molecular Recognition Features






MoRF SequenceStartStop




1) IELRRRSLAYWADL
2) KDVKRK
3) RMHRRLRVRFVLWP
439
389
476
452
394
489