<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32378

Description Mediator of RNA polymerase II transcription subunit 7
SequenceMEWSSSTLCAFTTERVAARYLAMNGDHNDDEAPQQHHGSGDNAAAGPSNSNQISTSFFPPPPQVYKNFTKRNLRYLDILNSHPLADGEPSWDQLDATQRLERQSAILRQHTSTSKTSAQEQQDDDVDMAVVEDSANDQGSDELPDFDLKAELEPPNVDWIEEDGGYTVFGQLWPIPDVMPSLEQLGIPVLYPLEGTDRKELLLTLLRTLLQTYREITGDLLKPAQPYDVWVPAVPDPSLTPEQQQQQMATNPGFWTQSTEAKDRLKHMQNVVVNMQFLINELRPVQAKETLKLIMQMQLERRKQETKLIRDKCESMRSRVEELKAMLAKQSRP
Length333
PositionMiddle
OrganismPseudozyma hubeiensis (strain SY62) (Yeast)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina> Ustilaginomycetes> Ustilaginales> Ustilaginaceae> Pseudozyma.
Aromaticity0.06
Grand average of hydropathy-0.717
Instability index48.50
Isoelectric point4.77
Molecular weight37857.01
Publications
PubMed=23814110

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. 
ECO:0000256	RuleBase:RU364060
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP32378
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     255.66|      77|      90|      14|      93|       1
---------------------------------------------------------------------------
   14-   93 (130.49/104.44)	ERVAArYLAMNGDHNDDEAPQQHHGSGDNAAAGPSNSNQISTSF..FP.....PPPQVykNFTKRNLRYLDILNSHPLADGEPSWDQ
  101-  184 (125.16/88.56)	ERQSA.ILRQHTSTSKTSAQEQQDDDVDMAVVEDSANDQGSDELpdFDlkaelEPPNV..DWIEEDGGYTVFGQLWPIPDVMPSLEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.30|      14|      89|     187|     202|       2
---------------------------------------------------------------------------
  185-  198 (25.03/19.97)	LGIPVLYPLEGTDR
  201-  214 (22.27/ 9.71)	LLLTLLRTLLQTYR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32378 with Med7 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DGEPSWDQLDATQRLERQSAILRQHTSTSKTSAQEQQDDDVDMAVVEDSANDQGSDELPDFDLKAELEP
2) YLAMNGDHNDDEAPQQHHGSGDNAAAGPSNSNQISTSFFPPPP
86
20
154
62










Molecular Recognition Features






MoRF SequenceStartStop




1) YKNFTKRNLRYL
65
76