<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32362

Description Serine/threonine-protein kinase SSN3
SequenceMTGDLNRIYNTHKSKSNENKLNKYKILGFLSSGTYGKVFKAEAVDDANKVYAIKKFKPDNQLFMGISQSAIREISLNSEINSENLAKLVEVLLMDGAIYMIFEYAEHDLLQIIYHHSQIVRNDIDPLVLKSFLYQLTNGVHYLHSNFIIHRDLKPANILVTNTGVVKVGDLGLARVFKAPLQPLYNGDKVVVTIWYRSPELLLGTRHYTPAIDIWAIGCIYAEMLSLRPLFKGDEVRLDNKKLPFQSHQMICIMDLLGFPNTTRYPDIKNLPDYNELMQFNPQQFSYKLNHWFAQRSNSLQGFDLLDKMLQYDPTQRLSAKDALNHPFFTTEQPQPLSAPLATHSENIYPTRRVTHDGELDGLSSQHSGVSGAGAGGGSAQSGPSRKRSRLV
Length392
PositionKinase
OrganismWallemia ichthyophaga (strain EXF-994 / CBS 113033)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Wallemiomycotina> Wallemiomycetes> Wallemiales> Wallemiaceae> Wallemia.
Aromaticity0.10
Grand average of hydropathy-0.318
Instability index39.99
Isoelectric point8.75
Molecular weight44359.20
Publications
PubMed=24034603

Function

Annotated function 
GO - Cellular Component
euchromatin	GO:0000791	IEA:EnsemblFungi
mediator complex	GO:0016592	IEA:EnsemblFungi

GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
cyclin-dependent protein serine/threonine kinase activity	GO:0004693	IEA:EnsemblFungi

GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IEA:EnsemblFungi









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32362
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.51|      33|      51|     128|     178|       2
---------------------------------------------------------------------------
   93-  125 (58.78/44.54)	LMDGAIYMIFEYAEH.DL..LQIIYHHSQIVR.NDID
  136-  172 (42.73/43.46)	LTNGVHYLHSNFIIHrDLkpANILVTNTGVVKvGDLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     197.25|      49|      51|     221|     270|       3
---------------------------------------------------------------------------
  181-  216 (56.52/34.99)	......LQPLYNGDKVVV...TIWYRSP..EL......LLGTRHYTPAIDIWA
  221-  270 (83.67/60.00)	YAEMLSLRPLFKGDEVRLdNKKLPFQSH..QMICIMD.LLGFPNTTRYPDIKN
  274-  317 (57.06/35.39)	YNELMQFNP..QQFSYKL.NHWFAQRSNslQGFDLLDkMLQYDPTQR......
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32362 with CDK8 domain of Kingdom Fungi
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