<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32348

Description Mediator of RNA polymerase II transcription subunit 14
SequenceMPGRLIMEHEGADNAPTSKGPGAAQTTNGVAPHSQSDGLSGAPNGYIPNGHSVPSENMAVSSSMLALPPEIRQVMLDSGPPPEIEHITEGFQPLGKLIGRAAQECYNELAEVLDEMAQMQVPQQANSSLPNGVNHNAGAAGAGVATPTGVQKKTMLMSFAHRRREMFIKLWILSQWSRQAEDVSKLIDIWTWQRATMDKFDNAAHFIADIKLSTHNAKMPNPDMKTALEVLSTGKASWMPDLNYIPQDPLDAQGIADTLQNLNSILSIRLNLHESLPRYLQKWSIASGRATFVIPGEFEFDVSVADEEPSSQFWFVDIRFLFSPAPQVSDEFKDILQNQCNAVLGTQGLARCHEFLHNFTLTHKISVLWRQAHEMNAGAWQDSLRIEHVHRVLVIQYWTDLPGGKNWLEFGVMSATSNDRNTFATNAAQPKIGMRWFRNGKETTDSVALQWEDVSMELTMKRVIARHINMVLASVHGKLVAAAGGNEAFGASLSTSETEPGDCALRAWLETPDNEITLKVDMATGRLTLLPATGSSARIEVELNRKDSPAEEVTRALAYYLCRSIQSNIEEHAESTGWKRLRHIRVKPDAMKAALNQDILQLSFFRGNGWDPSWAIVASITPLGLTWWSLELTDPVFGGAITAAIPIPSLRLNSKPVPISGSLLAKIERMAVAAISMRTTVRDLRQRKIPFGVREESVFTSPGTSGTPNAHQVVALYVQLSKLLQQSRNQPAPSATFWASDFVRLVYHGLDVERRKVLHIAKGFLAQRQVDMNRLLKTSDKDDCIFHSNGAFSMMLRSPFGTSFVKQFALCLHNIERLRFFIEVLQRRKFKIGKTSPSRISFRYGESASLSADIYLQEGAAMRLHLAPDNPQQRALVWLTNQLNDNDAGFDTFAHMLQLSLPLLRALQSIETRERPAAERPSIHSHSADWHSMVYSNPMSSFSIRLRTHKDKVQWHIQDTVASTRPPQQRSEPLRGALQALYSDEGKDWRGTGAGIVAGIVGVEEVMLKLDEVVTQHAVAEGAAPQQLPALQQPQHEVINID
Length1042
PositionTail
OrganismConiosporium apollinis (strain CBS 100218) (Rock-inhabiting black yeast)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Dothideomycetes incertae sedis> Coniosporium.
Aromaticity0.07
Grand average of hydropathy-0.277
Instability index47.91
Isoelectric point6.65
Molecular weight115691.33
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU365082

GO - Cellular Component
mediator complex	GO:0016592	IEA:UniProtKB-UniRule

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:UniProtKB-UniRule

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32348
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.30|      15|      18|      15|      32|       4
---------------------------------------------------------------------------
   18-   32 (27.07/16.30)	SKGPGAAQTTNGVAP
   34-   48 (29.23/10.13)	SQSDGLSGAPNGYIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.90|      29|     290|     209|     240|       5
---------------------------------------------------------------------------
  209-  240 (47.54/40.22)	DIKLsthNAKMPNPDMKTALEV.LSTGKASWMP
  502-  531 (47.36/31.05)	DCAL...RAWLETPDNEITLKVdMATGRLTLLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.83|      28|     674|     261|     289|       6
---------------------------------------------------------------------------
  261-  289 (43.44/35.85)	NLNSILSIRLNLH.ESLPRYLQKwSIASGR
  937-  965 (47.39/32.29)	NPMSSFSIRLRTHkDKVQWHIQD.TVASTR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32348 with Med14 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MAQMQVPQQANSSLPNGVNHNAGAAGAGVA
2) MPGRLIMEHEGADNAPTSKGPGAAQTTNGVAPHSQSDGLSGAPNGYIPNGHSVPS
116
1
145
55










Molecular Recognition Features






MoRF SequenceStartStop




NANANA