<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32326

Description Uncharacterized protein
SequenceMWVIIVLSCESYYPDPPASPASLLLALQPLLGGHNIFCLLPSVPSWWLSSTDVVTRLPPPSSSAGSSRSFFASLCCVPVIDFSMVVIENNAPTPTTYDVVFVVESSANVGAYFETLKSSYILPAIEHFNGGPPEAVDYGCNYSCSLYTLVTYCADDHAPGLAASCSSPTTSAQEFIQRLDNIEFSGGYGDLSYQIAEGLSTALQVFDDVNQLREPNVNAQKHCVLISNSTPVQVPCQENIKFAGLLPDQLLTNLAEIGVNFSIISPRKIPLLFKLFEKASGDLNSMKNFAVDSRHLVLLQGFHLQERPTSPEQSKTEVSMDLKSIIPIVSTTSQLTTPAGVSLMSSLVKGGSPGTMPAPSPQQQDTTLDGGFKPPGSLPLSAAAPMPPSPASLPTASTPGGSIVTASSSGPPVPSASQLQNSMQRQPSGKTGHSSAHEIASQILNAVRSGAQSSMGGGHQPQGNPGQQQPPQPSQAPTSASPGFPFPMSTVSQTGMGQTQSMPQNSVPNSASPAIMSTGLNPQQQPGGHEVPLPDLSSVQPQQARRVIWSGSLEWQDKAKSAQGLDTKFTRSLPCHMSLNQTDPDLNAGKWPTKLIMQLLPSALLAPLQTLFRKSRNVSFDFSSGDVEPLKNLHSLMNKGFAGCVYFPNVQGCEIKVLMLLYSNRKRQFMGLIPNDQTGFLNAIRTLIAKTKGRVGNQLNTGEVAMRSQMGMHQCCSLA
Length719
PositionUnknown
OrganismCapitella teleta (Polychaete worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Annelida> Polychaeta> Sedentaria> Scolecida> Capitellidae> Capitella.
Aromaticity0.06
Grand average of hydropathy-0.145
Instability index59.27
Isoelectric point6.36
Molecular weight76598.25
Publications
PubMed=23254933

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32326
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     187.80|      28|      30|     462|     489|       1
---------------------------------------------------------------------------
  300-  330 (29.87/ 9.19)	QGFHLQERP.TS.PEQSKTEVSMDL.K.siIPIvS
  350-  381 (35.90/12.53)	GGSPGTMPA.PS.PQQQDTTLDGGFkPpgsLPL.S
  428-  456 (28.42/ 8.38)	SGKTGHSSA.HEiASQILNAVRSGA.Q...SSM.G
  462-  489 (60.76/26.31)	QGNPGQQQP.PQ.PSQAPTSASPGF.P...FPM.S
  493-  517 (32.85/10.84)	QTGMGQTQSmPQ.NS.VPNSASPAI.......M.S
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.84|      15|      24|     666|     685|       7
---------------------------------------------------------------------------
  666-  685 (17.60/27.09)	KrqfmGLIPND.QTGFLnAIR
  692-  707 (23.23/13.69)	K....GRVGNQlNTGEV.AMR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.05|      21|      24|     605|     625|       8
---------------------------------------------------------------------------
  605-  625 (36.10/19.57)	LAPLQTLFRK..SRNVSFDFSSG
  630-  652 (33.95/18.04)	LKNLHSLMNKgfAGCVYFPNVQG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32326 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GVSLMSSLVKGGSPGTMPAPSPQQQDTTLDGGFKPPGSLPLSAAAPMPPSPASLPTASTPGGSIVTASSSGPPVPSASQLQNSMQRQPSGKTGHSSAHEIASQILNAVRSGAQSSMGGGHQPQGNPGQQQPPQPSQAPTSASPGFPFPMSTVSQTGMGQTQSMPQNSVPNSASPAIMSTGLNPQQQPGGHEVPLPDLSSVQPQQA
340
544










Molecular Recognition Features






MoRF SequenceStartStop




NANANA