<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32317

Description Uncharacterized protein (Fragment)
SequenceMQCTPQDLKERLLKAVDQDHNVVNMAEVLDVFSFLEKHTISREILEQTRMGLTVNNIRRHTSNKDLAKRARALLRAWQKLLPSTQPTVNGDAHNTGNGSVLHRNVNSLVNSAESKPNSPVSRPGTPGLSHRSVPPSPGYCSRPGTPASSSTHAANTPLSSFHKSRLSPKSAIATG
Length175
PositionUnknown
OrganismCapitella teleta (Polychaete worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Annelida> Polychaeta> Sedentaria> Scolecida> Capitellidae> Capitella.
Aromaticity0.03
Grand average of hydropathy-0.612
Instability index53.95
Isoelectric point10.33
Molecular weight19000.21
Publications
PubMed=23254933

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32317
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.37|      15|      19|     116|     130|       1
---------------------------------------------------------------------------
  116-  130 (33.15/15.01)	PNSP..VSRPGTPGLS..H
  134-  152 (25.22/10.05)	PPSPgyCSRPGTPASSstH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.94|      18|      19|      35|      52|       2
---------------------------------------------------------------------------
   35-   52 (28.94/22.51)	LEKHTISREILEQTRMGL
   57-   74 (27.99/21.56)	IRRHTSNKDLAKRARALL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32317 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QKLLPSTQPTVNGDAHNTGNGSVLHRNVNSLVNSAESKPNSPVSRPGTPGLSHRSVPPSPGYCSRPGTPASSSTHAANTPLSSFHKSRLSPKSAIATG
78
175










Molecular Recognition Features






MoRF SequenceStartStop




1) RARALLRAWQKL
2) THAANTPLSSFHKSRLSPKSAIAT
69
151
80
174