<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32313

Description Uncharacterized protein
SequenceMVVADQSDPDTIVSHVVRAWRERWAPPEWSVKFKRWLPKNSPKEFPGDSYNLADVLLENALIGGLANKILFDIYLHAALSGVIRVCSALKPLVLYTEMDKPLCLQGLLRIASDIIKSIRQTGGGCDPDYELGSVLLRIMHWALCLTEKSLLQLPSNDIKMRPLLKDACDAITSTWESGVTSSLIIIAKAEDEETWEQINQVENKLRNAVSVVQTNSTFTVDLQEKLLAVLKTIKSLRANEVWEPSRMSDTGPLLNVSYQAMNVSINVLLTVEALLHPTNTLASFVQEILCIQHTQGLSDSTVYCELIRSSFMGLIQSAKKPEELKWAALTYLKLPKALQSLSKQSNEPANTTVYQAMEMVLRYVPLLDLVDTKCNTECLQFLFVELAKLKLLSEPQVKQLQARRHTERQCSPKKPDQNTGAANQPCVQLILRAEQTAFNLLKTLDADFSKTQDGLLGVCSGMLSGKSFELIMTAFAAAGQLQSFAMKLIRLNEFARQSTGESPKGAQTRALLFDISFLMLCHIAMLYRSEVIFSSPEAVNSLFVQWVTRCLPENGHFKSAVLQQPPDQSKVDMLIGQLKAGELKTGLTKWSEVIHHMPFVIQAILTAWEAQAINEDRVKALMTSVRSHMCCLPVVACTWLCSHANICEQPARQKPLQMMRWLMVAEPPQDVSLSQLYNERSHLMQQSIIGSAHDFLPPAATRSPLPTTTATLEVLQDSVKMIFTKGCADVELIQRLDHMLKVGGHNWFVWHLVQEMLTHDRTEDLSSSVGLTYALLHLDIEGCTDALLNDTLPQLLLSNGSSQKLSDPRGKALATLCIMAINVARSLKKTSAPQFRRGKKRDRSQLELSDSEDDDLPASKVARLPDHSPSSLSSDAFTLNDFNSTKDYSPFVSPTSKDALITSLGNLFSSLSKALSTCSIGPRSCFLLSLLQLAVKSPKETFSLIRKTLPLSLVSDLLLTMPGEFDLSFLLKLRDLEQSEHRRVAVHNVFLCSRYRAQNAPAICES
Length1006
PositionTail
OrganismCapitella teleta (Polychaete worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Annelida> Polychaeta> Sedentaria> Scolecida> Capitellidae> Capitella.
Aromaticity0.06
Grand average of hydropathy-0.047
Instability index50.29
Isoelectric point6.89
Molecular weight111961.41
Publications
PubMed=23254933

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32313
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     214.27|      73|      93|     245|     328|       1
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  242-  325 (104.92/97.22)	WEP.............SRMSDTgPLLNVSYQAMNVsinVLLTVEAL.LHPTNTLASfvqeilCIQ.......HTQGLSDSTVYcELIRSSFMGLIQSAKKPEELK
  326-  419 (109.34/70.67)	WAAltylklpkalqslSKQSNE.PANTTVYQAMEM...VLRYVPLLdLVDTKCNTE......CLQflfvelaKLKLLSEPQVK.QLQARRHTERQCSPKKPDQNT
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.55|      52|     441|     440|     519|       2
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  443-  519 (68.96/99.43)	TLDaDFSKTQ...........DGLLGVCSGMLSGKSFELimtAFAAAGQLQSFAMKLIRL..........nefarqstgespkgaqtrallFDISFLM
  878-  971 (64.59/37.18)	TLN.DFNSTKdyspfvsptskDALITSLGNLFSSLSKAL...STCSIGPRSCFLLSLLQLavkspketfslirktlplslvsdllltmpgeFDLSFLL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.58|      34|      40|      93|     126|       3
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   93-  126 (60.86/37.90)	VLYTEMDKPLCL..QGLLRIASDIIKSIRQTGGGCD
  134-  169 (55.72/34.07)	VLLRIMHWALCLteKSLLQLPSNDIKMRPLLKDACD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.06|      29|     624|      35|      63|       4
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   35-   63 (52.21/32.64)	RWL.PKNSPKEFP.GDSYNLADVLLENALIG
  660-  690 (43.85/26.26)	RWLmVAEPPQDVSlSQLYNERSHLMQQSIIG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     217.84|      66|     146|     568|     638|       9
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  568-  638 (109.03/98.71)	QSKVDMLIGQLKAG.ELKTGLTKWSEVIHHMPFVIQAIltaweAQAINEDRVKALMTSV..RSHMCCLPVVACT
  716-  784 (108.82/84.67)	QDSVKMIFTKGCADvELIQRLDHMLKVGGHNWFVWHLV.....QEMLTHDRTEDLSSSVglTYALLHLDIEGCT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32313 with Med24 domain of Kingdom Metazoa
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