<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32309

Description Uncharacterized protein
SequenceMLETLVENNIVPARGVCESLLNSKELSHKSPDKWNSTFRLIRKIIGGVDYKGCRDLLRVMLEKTHSIPSEEDSSVMQLMDEVHRVVSYVIDRKTCLLPSYLAVNEITKLYGEDRAVPHWKLGILLTDFVQSFRPAAQLVSISGRASLLPVVAHSSAVSHVWKLNSCNLRFQLNGPLPYSKELSEPQTALLRYVLEQPYSRDMVCNMLSLNKQVKQRCSVLEEQLVDLVVLAMEGSENNNTDNSMSDENDSNQLLWQHLSSQLIFFVLFQFASFPHMVNSLYSKLSKRELRKGRDHLMWILLQFISGSIQKNPLEDFLPIMRLYDLLYPEKESLPLPDISKPAATFKMAVTCIWIHLNKKAQNDKVKLQRPFPHALHSHIEFLKNCMSVKNLPMTDYRIALLCNAYSTNTDYYALPMGILVESIYGNNQKTSMLPGNITASAPTQPLPMSMLDSLTVHAKMSLIHSIVTRVIRLAQNKSNAVALAPALVETYSRLLVYIEIESLGIKGFISQLLPSVFKSHAWGILHTLLEMFSYRLHHIQPHYRIQLLSHLHSLASVPQTNQNQLHICVESTALRLIMGLGSGEVQPQLSRVLNEPKTLTLLSSESEELNRALVLTLARSLHVTGCDSSGNWCRDILTTIQQHTPHSWASHTLAYFPQVISDFYKQNPIQREDKNTLKRSVDTEYRKWKSMASESDLINHFSMQGSQGMSPLFLCVLWKSLVEDKRFAPTAYKVLDRLGPRLLSAHLRTFADYLVYEFATAGAGQQINKCVESLNDLIWKCNIISVDRLVLCLALRNFEENESQVCFFIIQVVLVRSPEFRNRVNEFVKENAPDHWMQTGWHEKHMAFHRTYPERFYYDGAQDISQASQHQYLPVYFGNLCLRFLPVFDILIHRLLEAPPVPKFWDLLLDQLGGLYKFHDRPLTYLYNTLHYYERKLREHPSFKKKLVGTIIGALKDIKSANWCLTEDYRSFMKQPPEESNWNPDQDYFNRLIGRIVSTIAGDNPPPFPTCDWRFNEFPNPAAHALHATCIELMALPVDSHVVGAELIDIVLKGPVHIGRKKVFPWMNAIGMVLTALPDGYWIVIHERVAETLQLPHLGIMSSDPFHMLNFNHSHSVIAEFSCSYVLAMCHSVWQHASIGQLSILPAFLKEKLRPLVKSEAQFLFVCHLVGPFLQRFHTERTRCLLELTVELYEMLENVDKSVDHLHHMDPITDFLYHIKYMWVGDGVKHEVEKIIRNLRPAMRMRLRFISHHSKDETSAA
Length1261
PositionTail
OrganismCapitella teleta (Polychaete worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Annelida> Polychaeta> Sedentaria> Scolecida> Capitellidae> Capitella.
Aromaticity0.09
Grand average of hydropathy-0.129
Instability index43.51
Isoelectric point7.92
Molecular weight144739.92
Publications
PubMed=23254933

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32309
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     304.68|      87|     145|     546|     633|       1
---------------------------------------------------------------------------
  439-  521 (68.99/42.27)	.........ASAP.TQ..............................................PLPMSM.LDSLTVHAKMSlihsivtRVI......RLAQNKSNAVALAPALVETYSRllvyieieS...LGIKGFISQllpsvfKS...H.A
  546-  633 (142.53/100.52)	QLLSHLHSLASVPQTNQNQLH...................................ICVESTALRLIMgLGSGEVQPQLS.......RVLNE..PKTLTLLSSESEELNRALVLTLAR........S...LHVTGCDSS......GN...W.C
  658-  781 (93.15/59.82)	QVISDFYKQNPIQREDKNTLKrsvdteyrkwksmasesdlinhfsmqgsqgmsplfLCVLWKSL.....VEDKRFAPTAY.......KVLDRlgPR...LLSAHLRTFADYLVYEFAT........AgagQQINKCVES......LNdliWkC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.61|      21|     945|      28|      48|       3
---------------------------------------------------------------------------
   28-   48 (39.54/21.56)	HKSPDK..WNST...F.RLIRKIIGGV
  974- 1000 (26.06/12.03)	KQPPEEsnWNPDqdyFnRLIGRIVSTI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.97|      23|     152|     688|     710|      10
---------------------------------------------------------------------------
  688-  710 (43.30/26.62)	W..KSMASESDLINHFSMQGSQGMS
  841-  865 (41.67/25.35)	WheKHMAFHRTYPERFYYDGAQDIS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32309 with Med23 domain of Kingdom Metazoa
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