<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32305

Description Uncharacterized protein
SequenceMPKYRIERVNRTDRRKRNVYTAIPPPSMQSAVHKKRKNAIRLRNGQTGRGGLSKPTTTAPDYFAQPGHERRPAGPAPTTTSYREEGTALASSKYADDERPGPRVPISQLIRIYNYVMKRWSGQTPEQASTTVDEVPSSAMSTADMTGTIDDAGAVNTDDTTKAAGGIGGDQPPTQTGSGVGGGGDADMDSEPDDGSGVELTKDEMIRVPQGDRYKVFSHPSQILIAGATKSGKTTLLMNVLKLAGMMFEPVPEEVYWFYTMPSFVAHVPKALPSVRLRNGVPTEDMITSITKEGRPKLIVLDDMQDVLEDKKQTKMLMDVLTKVSHHGNLTIVFIVQNLYQPNMKKVRSQCDEIIVMGNGSAAMHNAEQLGRSLLAEKGASYLKECLSKARRLSNHSHLLVSSGAHTGPFNVRCGILPGDPAQAFFVQRNTVTTPEYARLKKHGEEGERMEEEEKRISRRERKAEKERSAVVIRQEGTLREAVGQQVPQCLHRILEQRLQYGRPICQYHRVKLSTEGEEGRTGDRQRQGVHYEPYYPDREPSIFSDSLRAGPERMANLKRKLEMADEPSYETDWDSTEERKIHATHIEDNQPLDFEFGSWREAVRFVTGQLFLVVKFTKRDGTDFPTDIKQMGNSNAWLREGFMTNVIKDVEVIVNGVSIPMHNYDHIARIWSTMTMPKERLEGDWEKMISDFGVSRDAAVNADSTRADAAAINDGLKTMTPNTIPSHTTAVTAGGTVAIQEQEAYNKIKSRRLLGSRKQHFSAYIQHPFFTSGFKFLPPAAPLRVRITFNNAANCFQCRTANVPRIHILDAYFKDHLIKVKPELASSIARSIMSKGGKMNFPIQRRVITEFNLPKGTSITINRALLGILPSRLSMVIVPNSVWKTNNSTRNPYLYEFPGLTRLKVSYGDKDWPMKDGISFREVPNHAPPYNDEEIERMVWANVDEYKTMRSVFTPNTFLHKLAVDARDYFKYQFVMGIDMSPLAIECMNSDTREPRYEGDLTITMEFSHTLGAAIGHQTPQTMEEQQLEQQQQQQQQQQQAKNMEEEEEEEKKEHVGPAIEGQARPKKKRKVEEVAMVSSDESGDSDDDDDIQDAVSHLQYLTVYVASHDKAPPKKKSNLSALSYRAPRAEVFSVMREEENPTTHSLSGFVITYGREMYVLPVNWLRQMNKYPDFAHGTKDVYCSFPLGEIARKMSNEQDKQVAMGMDENDGEFSVEEVDAARKAFVFMKDDNMDDNCGGRKGRSRDICDGECFFELRKLHANDNNE
Length1268
PositionMiddle
OrganismCapitella teleta (Polychaete worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Annelida> Polychaeta> Sedentaria> Scolecida> Capitellidae> Capitella.
Aromaticity0.07
Grand average of hydropathy-0.675
Instability index47.55
Isoelectric point6.59
Molecular weight143007.88
Publications
PubMed=23254933

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32305
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.19|      29|      95|     428|     465|       1
---------------------------------------------------------------------------
  435-  463 (50.47/45.62)	PE.YARLKKHGEEGERMEEEEKRISRRERK
  552-  581 (47.72/21.29)	PErMANLKRKLEMADEPSYETDWDSTEERK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.66|      22|      95|     187|     208|       4
---------------------------------------------------------------------------
  144-  163 (31.56/15.94)	DMTGTI.DDAGAV..NTDDTTKA
  169-  185 (19.29/ 6.92)	G.DQPPtQTGSGVGGGGD.....
  187-  208 (38.81/21.27)	DMDSEP.DDGSGVELTKDEMIRV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.95|      26|     158|    1035|    1060|       5
---------------------------------------------------------------------------
 1035- 1060 (44.88/26.02)	QQQQQQQAKNMEEEEEEEKKEHVGPA
 1198- 1223 (44.07/25.43)	NEQDKQVAMGMDENDGEFSVEEVDAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.36|      27|     233|      18|      45|       9
---------------------------------------------------------------------------
   18-   45 (45.25/35.28)	NVYTAIPPPSMQSAVHKKRkNAIRLRNG
  254-  280 (52.11/36.02)	EVYWFYTMPSFVAHVPKAL.PSVRLRNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.37|      33|     158|     668|     708|      10
---------------------------------------------------------------------------
  668-  708 (47.70/45.51)	IAR.IWS...TMTMPKERlegdweKMISDFGVSRDAAVNADstRA
  829-  865 (48.67/27.10)	IARsIMSkggKMNFPIQR......RVITEFNLPKGTSITIN..RA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32305 with Med4 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EYARLKKHGEEGERMEEEEKRISRRERKAEKERSAVVIRQEGT
2) MKRWSGQTPEQASTTVDEVPSSAMSTADMTGTIDDAGAVNTDDTTKAAGGIGGDQPPTQTGSGVGGGGDADMDSEPDDGSGVELTKDEM
3) MPKYRIERVNRTDRRKRNVYTAIPPPSMQSAVHKKRKNAIRLRNGQTGRGGLSKPTTTAPDYFAQPGHERRPAGPAPTTTSYREEGTALASSKYADDERPGPRVPISQ
4) SHTLGAAIGHQTPQTMEEQQLEQQQQQQQQQQQAKNMEEEEEEEKKEHVGPAIEGQARPKKKRKVEEVAMVSSDESGDSDDDDDIQD
436
117
1
1009
478
205
108
1095










Molecular Recognition Features






MoRF SequenceStartStop




1) RKRNVYTAIPPPSMQSAVHKKRKNAIRLRNGQT
2) RVPISQLIRIYNYVMKRW
15
103
47
120