<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32304

Description Uncharacterized protein
SequenceMDPLTAIYRNLIQPLNGRAIPADITPHEPRAVYTVEDIERRTRGQADNPEWMACRYGRVTASVCGRIIHASSRAFRGNKAAALATIAEGIVHPKDFTSKATDWGKTNEGAAIQAYIQDAAQFPPGATLDSDCGLYLDPHHPWIGVSPDGIVTLPNSSGTRVLLEVKCPYGQRTDPDFSASGFYLKRGDGTLLATCGGKGNGRDEYLLNMKTAQGRNYYYQIQLSLAVLNIDYAHLFVWTPTKTTSVHIRRQDPVRERQMIKCLKDFYTSSIEARIDKDNQLVTMPKYRIERVNRTDRRKRNVYTAIPPPSMQSAVHKKRKNAIRLRNGQTGRGGLSKPTTTAPDYFAQPGHERRPAGPAPTTTSYREERTALASSKYADDERPGPRVPISQLIRIYNYVMKRWTANVPRIHILDAYFKDHLIKVKPELASSIARSIMSKGGKMNFPIQRRVITEFNLPKGTSITINRALLGILPSRLSMVIVPNSVWKTNNSTRNPYLYEFPGLTRLKVSYGDKDWPMKDGISFREVPNHAPPYNDEEIERMVWANVDEYKTMRSVFTPNTFLHKLAVDARDYFKYQFVMGIDMSPLAIECMNSDTREPRYEGDLTITMEFSHTLGAAIGHQTPQTMEEQQLEQQQQQQQQQQQQQQQQQQQQQAKNMEEEEEEEKEHVGPAIEGQARPKKKRKVEEVAMVSSDESGDSDDDDDIQDAVSHLQYLTVYVASHDKAPPKKKSNLSASSYRAPRAEVFSVMREEENPTTHSLSGFVITYGREMYVLPVNWLRQMNKYPDFAHGTKDVYCSFPLGEIARKMSNEQDKQVAMGMDENDGEFSVEEVDAARKAFVFMKDDNMDDNCGGRKGRSRDICDGECFFELRKLHANDNNE
Length880
PositionMiddle
OrganismCapitella teleta (Polychaete worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Annelida> Polychaeta> Sedentaria> Scolecida> Capitellidae> Capitella.
Aromaticity0.08
Grand average of hydropathy-0.721
Instability index46.50
Isoelectric point8.09
Molecular weight99913.52
Publications
PubMed=23254933

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32304
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.38|      40|     156|     340|     381|       1
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  340-  381 (67.18/43.40)	TTAPDYFAQPGHERRPAG......PAPTTTSYREerTALASSKYADDE
  493-  538 (68.21/38.53)	TRNPYLYEFPGLTRLKVSygdkdwPMKDGISFRE..VPNHAPPYNDEE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     541.48|     174|     655|      17|     203|       2
---------------------------------------------------------------------------
   17-  203 (273.86/204.89)	GRAIPADITPHEPRAVYTVEDIERRTRGQADNPEWM...ACRYGRVTASVCG.......RIIHASSRAFRGNKAAALATIAEGiVHP..KDFTSKATDWGKTNEGAAIQaYIQDAAQFPPGA..TLDSDCGLyldphhPwIGvspDGIVTLPNSSGTRVLLEVKCPYGQRT..DPDFSASGFYLKRgDGTLLATCGG.KGNGRD
  670-  860 (267.63/163.84)	GPAIEGQARPKKKRKVEEVAMVSSDESGDSDDDDDIqdaVSHLQYLTVYVAShdkappkKKSNLSASSYRAPRAEVFSVMREE.ENPttHSLSGFVITYGREMYVLPVN.WLRQMNKYPDFAhgTKDVYCSF......P.LG...EIARKMSNEQDKQVAMGMDENDGEFSveEVDAARKAFVFMK.DDNMDDNCGGrKGRSRD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.64|      22|      66|     237|     258|       5
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  237-  258 (40.79/27.84)	VWT....PTKTTSVHIRRQDPVRERQ
  302-  327 (32.85/20.98)	VYTaippPSMQSAVHKKRKNAIRLRN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32304 with Med4 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MPKYRIERVNRTDRRKRNVYTAIPPPSMQSAVHKKRKNAIRLRNGQTGRGGLSKPTTTAPDYFAQPGHERRPAGPAPTTTSYREERTALASSKYADDE
2) SHTLGAAIGHQTPQTMEEQQLEQQQQQQQQQQQQQQQQQQQQQAKNMEEEEEEEKEHVGPAIEGQARPKKKRKVEEVAMVSSDESGDSDDDDDIQDA
284
612
381
708










Molecular Recognition Features






MoRF SequenceStartStop




NANANA