<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32302

Description Uncharacterized protein
SequenceMVIVPNSVWKTNNSTRNPYLYEFPGLTRLKVSYGDKDWPMKDGISFREVPNHAPPYNDEEIERMVWANVDEYKTMRSVFTPNTFLHKLAVDARDYFKYQFVMGIDMSPLAIECMNSDTREPRYEGDLTITMEFSHTLGAAIGHQTPQTMEEQQLEQQQQQQQQQQQAKNMEEEEEEEKEHVGPAIEGQARPKKKRKVEEVAMVSSDESGDSDDDDDIQDAVSHLQYLTVYVASHDKAPPKKKSNLSASSYRAPRAEVFSVMREEENPTTHSLSGFVITYGREMYVLPVNWLRQMNKYPDFAHGTKDVYCSFPLGEIARKMSNEQDKQVAMGMDENDGEFSVEEVDAARKAFVFMKDDNMDDNCGGRKGRSRDICDGECFFELRKLHANDNNE
Length392
PositionMiddle
OrganismCapitella teleta (Polychaete worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Annelida> Polychaeta> Sedentaria> Scolecida> Capitellidae> Capitella.
Aromaticity0.09
Grand average of hydropathy-0.882
Instability index47.29
Isoelectric point4.86
Molecular weight45118.68
Publications
PubMed=23254933

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32302
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.80|      23|      25|     279|     303|       1
---------------------------------------------------------------------------
  281-  303 (45.03/37.12)	REMYV.LPVNWL.RQMNKYPD..FAHG
  305-  331 (28.76/14.05)	KDVYCsFPLGEIaRKMSNEQDkqVAMG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.56|      18|      25|     229|     246|       3
---------------------------------------------------------------------------
  181-  198 (28.14/16.80)	VGPAIEGQARPKKKRKVE
  229-  246 (30.23/18.53)	VYVASHDKAPPKKKSNLS
  257-  273 (26.18/15.18)	VFSVMREEENPTTHS.LS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.18|      17|      19|     143|     159|       5
---------------------------------------------------------------------------
  143-  159 (30.07/15.47)	HQTPQTMEEQQLEQQQQ
  164-  180 (28.12/14.09)	QQQAKNMEEEEEEEKEH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32302 with Med4 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SHTLGAAIGHQTPQTMEEQQLEQQQQQQQQQQQAKNMEEEEEEEKEHVGPAIEGQARPKKKRKVEEVAMVSSDESGDSDDDDDIQD
134
219










Molecular Recognition Features






MoRF SequenceStartStop




1) DDIQDAVSHLQYLTVYVASHDK
2) YLYEFPGLTRL
215
19
236
29