<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32297

Description Uncharacterized protein
SequenceMLKTHIGQLARPETTADRDVLKTLIQRTQRLEAHLHKVEVTLTRSKPGPRIPTRPTASTPPSIRAKRALSVLLTGLNSSNCAKRLGNMAGHDSPDITDDERDRIVRRKTEAIVGKPILLSSTGKVKATPIRDDSIAATLKRAARGTDLSLVQIHSSNGVLFECRNVFRAYMWFKQVDPPTEKRTPAELRHSYNVPEHIAFFGIDERNISRWSRSQYGVFNVVSERANAAIRFYMNRETTGEDAFVALVKWLSRHKSLFTAKCERRRVAFDASRGMFLPPCVYPFEEDASPRFTRGSIPLRHISSNPAPPTVRLPAGSAAQQQAQVQAAHANAPNSGPQQSRGGTAAAHAAAAAAQQARRQGQSIAKQQPVPVTMGATRAPSVDTRAAQNRQR
Length392
PositionTail
OrganismChondrus crispus (Carrageen Irish moss) (Polymorpha crispa)
KingdomRhodophyta
LineageEukaryota> Rhodophyta> Florideophyceae> Rhodymeniophycidae> Gigartinales> Gigartinaceae> Chondrus.
Aromaticity0.05
Grand average of hydropathy-0.537
Instability index56.99
Isoelectric point10.93
Molecular weight43206.63
Publications
PubMed=23503846

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32297
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.79|      13|      16|     327|     342|       1
---------------------------------------------------------------------------
  327-  341 (20.23/18.53)	AAHANApnSGPQQSR
  346-  358 (22.57/ 7.56)	AAHAAA..AAAQQAR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     209.92|      70|      76|       5|      80|       2
---------------------------------------------------------------------------
    5-   80 (104.37/76.41)	HIGQLA...RPETTAD.RDvlkTLIQRtqRLEAHLHKvEVTLTRSKPGPRIPTRPTASTPPSIRAKRALSVLLTGLNSSN
   84-  157 (105.55/61.57)	RLGNMAghdSPDITDDeRD...RIVRR..KTEAIVGK.PILLSSTGKVKATPIRDDSIAATLKRAARGTDLSLVQIHSSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.45|      18|      18|     279|     296|       3
---------------------------------------------------------------------------
  279-  296 (36.60/21.91)	PCVYPFEEDASP..RFTRGS
  298-  317 (28.85/15.72)	PLRHISSNPAPPtvRLPAGS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32297 with Med27 domain of Kingdom Rhodophyta
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