<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32252

Description Uncharacterized protein
SequenceMATKSDKAIGIDLGTTYSCVGVWMNDRVEIIPNDQGNRTTPSYVAFTDTERMIGDAAKNQVALNPQNTVFDAKRLIGRRFTDPSVQSDMRHWPFKVVSGPGDKPMIVVSYKNEEKQFSPEEISSMVLVKMREVAESFLGHAVNNAVVTVPAYFNDSQRQATKDAGAISGLNVLRIINEPTAAAIAYGLDKKGTKTGERNVLIFDLGGGTFDVSLLTIEEGVFEVKATAGDTHLGGEDFDNRLVNHFAAEFRRKHKKDIAGNARALRRLRTACERAKRTLSSTAQTTIEIDSLHEGIDFYATISRARFEEMNMDLFRKCMDPVEKVLKDAKLDKARVHEVVLVGGSTRIPKIQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILTGEGSDKVQDLLLLDVAPLSLGIETAGGVMTVLIPRNTTVPCKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGTFELKGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNQITITNDKGRLSKEEIEKMVQDAEKYKAEDEQVKKKVEAKNSLENYAYNMRNTIKDEKLAQKLEQEDKQKIEKAIDETIEWIEGNQLAEVDEFEYKLKELEGICNPIISKMYQGSAGAGGPTGGMPTDGGFGGSSGAGGPKIEEVD
Length650
PositionUnknown
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.06
Grand average of hydropathy-0.411
Instability index35.90
Isoelectric point5.34
Molecular weight71296.97
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32252
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.75|      10|      26|     205|     214|       2
---------------------------------------------------------------------------
  205-  214 (19.09/10.68)	LGGGTFDVSL
  233-  242 (19.67/11.22)	LGGEDFDNRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.78|      13|      26|      41|      54|       3
---------------------------------------------------------------------------
   41-   54 (20.68/17.57)	PSYVAFtDTERMIG
   65-   77 (24.10/15.15)	PQNTVF.DAKRLIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.81|      22|      26|     287|     309|       4
---------------------------------------------------------------------------
  278-  299 (34.06/16.12)	TLSSTAQTTIEIDSLHEGIDFY
  301-  322 (38.75/24.26)	TISRARFEEMNMDLFRKCMDPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.89|      10|      26|     475|     484|       5
---------------------------------------------------------------------------
  475-  484 (20.42/15.79)	GVP.QINVCFD
  501-  511 (13.47/ 7.79)	GVKnQITITND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.10|      14|      26|     561|     574|       6
---------------------------------------------------------------------------
  561-  574 (22.64/17.83)	EKLAQKLEQEDKQK
  589-  602 (23.46/18.77)	NQLAEVDEFEYKLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.86|      10|      17|     616|     625|       7
---------------------------------------------------------------------------
  616-  625 (21.91/10.55)	YQGSAGAGGP
  635-  644 (21.96/10.59)	FGGSSGAGGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.63|      34|     189|     169|     204|       8
---------------------------------------------------------------------------
  169-  204 (49.86/42.99)	GLNVLRIINePTaAAIAYGLD.KKGTKTGE.....RNVLIFD
  361-  400 (47.77/31.53)	GKELCKSIN.PD.EAVAYGAAvQAAILTGEgsdkvQDLLLLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.29|      13|      19|     105|     117|      10
---------------------------------------------------------------------------
  105-  117 (21.62/14.79)	MIVVSYKNEEKQF
  125-  137 (20.68/13.85)	MVLVKMREVAESF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32252 with Med37 domain of Kingdom Viridiplantae
Unable to open file!