<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32251

Description Uncharacterized protein (Fragment)
SequenceRSYLPEVQKPIGPQTNWSEHAKALESPSSVTKFLSSNVLYALESQKPRDMAARSISFPSVNVHAHPQVTKAWRALSSLSINNAYLRPGFTPPVDTSGTNGSYSARERSTVKVISSTDGSFDRQNQSAMNVSGTGRSFHSFPSSVPGEDKIIAENFPRVNHEVRESEPRRTHLNGVENSFRNSAFPSEQLESGKACLDDIDDDELLENIDVDQIVMEHYHSTSTPQPSASNFSLRTPPVDRSASRFEEDGCMPSELCSNCSHGIKLGLCPEASTHVDQMKDVLLAISNELLDDATDLSPDRVQQLRQERLQLKNQIQQLENHIRDKDSRKSQFLSSTATHTFQYETPKSTTYKMDYPQTDFRSLPSDQGRYVCDSWNMPRDSSFSVDKYGLSSAPVEREQYIPKIIDVTYTEGSSDKRWSSHDFPWTRKLEINNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLSRFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPGIPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVVPKTKKCMEDIDKFIKENHFDECGIIYCLSRMDCEKVAEKLQEFGHKTAFYHGSMEPEQRAFVQTQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMANGYNRVASSGRILETNTENLLRMVSYCENEVDCRRFLQLVHFGEKFDSTNCKNTCDNCCSTQSLIDKDVTLITKQLVELVKQTGERFSSAHILEVYRGSLNQMVKKNRHETLQLHGAGKHLSKIEVSRILHYLVTEDILVEDVRKSDMYGSVSSLLKVNNTKASLLFSGRQTIMMRFPSSVKVVKPSKPGVTPAKGPLTSEKQSTLPLSTEDAPPKDLNLSANMYTALRKLRTALVKEAPDGVMAYHIFINSTLQQISRRIPRTKEELLEINGLGKAKVSKYGDQLLETIESTVNEYYGTNKKDSIISNDSPNSGKRRRDENTSPNVAEDDDFEVSPSQSCKKTVRNKSNEVLHGTCVDGDRVGMVMEKLDFDFEDEDGSEIRPEGRVLPW
Length1179
PositionUnknown
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.07
Grand average of hydropathy-0.534
Instability index49.02
Isoelectric point6.46
Molecular weight132504.92
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32251
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.83|      15|     144|      79|      96|       1
---------------------------------------------------------------------------
   79-   96 (24.50/23.95)	SINNAYLRpgfTPPVDTS
  227-  241 (29.34/17.42)	SASNFSLR...TPPVDRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.07|      20|     144|     667|     687|       2
---------------------------------------------------------------------------
  667-  687 (34.09/30.35)	YCLSRMDCEKVAeKLQEFGHK
  814-  833 (38.99/29.27)	YCENEVDCRRFL.QLVHFGEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.32|      17|      77|     796|     812|       3
---------------------------------------------------------------------------
  796-  812 (29.20/19.69)	SSGRILETNTENLLRMV
  876-  892 (30.12/20.55)	SSAHILEVYRGSLNQMV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.21|      42|      81|      15|      59|       6
---------------------------------------------------------------------------
   15-   59 (64.10/51.19)	TNWSEHAKalESpSSVTKFLSSNVLYALESQKPRDMAA..RSI.SFPS
   98-  142 (64.11/40.09)	TNGSYSAR..ER.STVKVISSTDGSFDRQNQSAMNVSGtgRSFhSFPS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32251 with Med34 domain of Kingdom Viridiplantae
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