<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32247

Description Uncharacterized protein (Fragment)
SequenceINCRDILLEDADKVRAITEYVSSYAVENLVVGAASRNGFMRRFKTDLPTTVSKAAPDFCSVYVISKGKIASVRNASRPAPYHTSMQQCEIDNHYPHTPDKAPKHHDHSNSAGSTPSRPRRSVEADPTRSPLVKRKPYGDLYDSDSDLSFISPSSHRDSDISFISSGRPSVERSSFSLDFPESARTSRISTSSEQSIGSHRLGLKFSDPGFPNESSTFSEESGRTSSYSSQSLDDVEAEMKRLRLELKQTMDMYSTACKEALSARQEATELQKLRTEEERRLEEAKSSEEAAMSIVEKERAKAKAALEAAEAAKRLAEVEAKRRLTAEMKTLNESDSFSRGFVRYRKYTVEEIEEATSNFAESQKVGEGGYGPVFRGFLDHTSVAVKVLRPDAAQGRSQFQKEVEVLSCIRHPNMVLLLGACPEFGILVYEYMAKGSLEDRLFRRGNTPPITWQLRFRIAAEIATGLLFLHQTKPEPIVHRDLKPGNVLLDYNYVSKISDVGLARLVPAVAENVTQYRVTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIMLLQILTAKQPMGLAYYIEQAIEEGTLKDMLDPAVPDWPMEEALSLAKLSLQCAELRRKDRPDLGKEILPELNRLREIGEESLESVFYAGNQGKSSNTSQVSVSASSLFKNL
Length661
PositionTail
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.07
Grand average of hydropathy-0.485
Instability index53.61
Isoelectric point6.07
Molecular weight73591.09
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32247
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     127.00|      33|      35|      98|     132|       1
---------------------------------------------------------------------------
   98-  130 (59.61/22.87)	PDKAPKHHD..HSNSAGS..TPSRPRRSVEADPTRSP
  133-  158 (16.25/ 6.77)	.KRKP.YGDlyDSDSDLSfiSPSSHRDS.........
  211-  243 (51.14/18.46)	PNESSTFSE..ESGRTSS..YSSQSLDDVEAEMKRLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.79|      25|      35|     317|     350|       2
---------------------------------------------------------------------------
  317-  341 (41.45/37.62)	EVEAKRRLTAEMKTLNES..DSFSRGF
  351-  377 (38.35/16.55)	EIEEATSNFAESQKVGEGgyGPVFRGF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.19|      26|     349|     269|     294|       3
---------------------------------------------------------------------------
  269-  294 (43.31/23.86)	ELQKLRTEEERRLE.......EAKSSEEAAMSI
  620-  652 (33.88/17.27)	ELNRLREIGEESLEsvfyagnQGKSSNTSQVSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.69|      22|      35|      15|      37|       5
---------------------------------------------------------------------------
   15-   37 (30.38/30.14)	RAITEYVSSYAVENLVVgAASRN
   53-   74 (37.31/30.46)	KAAPDFCSVYVISKGKI.ASVRN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32247 with Med32 domain of Kingdom Viridiplantae
Unable to open file!