<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32244

Description Uncharacterized protein
SequenceMSSSEVKQLIVVAEGTAALGPYWQTIVSDYLDKIIRSFCGTELNGERNPVSTVELSLVIFNSHGSYCACLVQRSGWTRDVDIFLHWLSSIQFGGGGFNEVATAEGLAEALMMFPPPSGQAQPSSDLKRHCILITASNPHTLPTPVYRPRLQNVERNENGDTQSESRLSDAETVASYFAKCSVSLSVVCPKQLPKIRALYNAGKLNPQSVDLSIDTVKNPFYLVLISENFVEARAALSHSATNLPQTQSPVKMDRATVAPSLPVTGQPPAPVTSANGPILNRQPVSVGPVPTATVKVEPSTVTSMAPVPSFPHIPSVARPATQAIPSIQTSSASPASQDMVTNAENAPDIKPVVVGGMTAPLRAGPPGGANVNLLNNLSQVRQVMSSAALAGAASSVGQSAVAMHMSNMISTGMATSLPPSQNAFSSGQQGTTSMASSGALMGSAQTGQSVGTNNAFSPQTTSNVASNLGVSQPMQGMNQGSHSGAQMMQGGISMNQNMMSGLGHGNVSSGTGGMMPTPGVAQQAQSVIQQLGGSNSSGPNMQLSQPSSGALQTSQSKYVKVWEGNLSGQRQGQPVLITRLEGYRSASASDTLAANWPATMQIVRLISQDHMNNKQYVGKADFLVFRAMSQHGFLGQLQDKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQIPNQQQQLQQQHQQQQQIQQQQQQQHHQQQQMPQLQQQPQQQQLPQLQQQQQHQLSQLQHHQQQQQQQQQQQQQQHQLTQLQHHHQQQQQQTSPLNQMQQQTSPLNQMQQQQQPQQMVMGGQGFAQAPGRSQQGGSGQPNMPGAGFMG
Length827
PositionUnknown
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.04
Grand average of hydropathy-0.433
Instability index60.00
Isoelectric point8.83
Molecular weight88632.75
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32244
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     225.83|      23|      24|     727|     749|       1
---------------------------------------------------------------------------
  679-  701 (39.88/11.51)	QIPNQQQ.QLQQ.QHQQQQQiqQQQ
  702-  724 (45.59/14.25)	QQQHHQQQQMPQLQQQPQQQ..QLP
  725-  747 (50.69/16.70)	QLQQQQQHQLSQLQHHQQQQ..QQQ
  748-  770 (51.98/17.32)	QQQQQQQHQLTQLQHHHQQQ..QQQ
  775-  794 (37.69/10.46)	NQMQQQTSPLNQM...QQQQ..QPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     268.32|      47|      48|     429|     475|       2
---------------------------------------------------------------------------
  339-  399 (44.92/14.05)	M....VTNAENAPDIKPVVVG..GMTA....PLRagpPGGANVNllnnlsqvrqvmSSAALA...GAASSvGQS
  403-  449 (67.85/25.17)	M....HMSNMIS....TGMATSLPPSQnafsSGQ...QGTTSMA............SSGALM...GSAQT.GQS
  450-  493 (73.98/28.15)	V....GTNNAFSPQTTSNVASNLGVSQ....PMQ...GMNQG.S............HSGAQM.....MQG.GIS
  494-  526 (44.55/13.88)	M......N........QNMMSGL..........G...HGNVS.S............GTGGMMptpGVAQQ.AQS
  527-  556 (37.02/10.23)	ViqqlGGSNSSGP........NM................QLSQP............SSGAL.......QT.SQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     140.46|      27|      42|     244|     270|       3
---------------------------------------------------------------------------
  160-  193 (21.24/ 7.25)	.DTQSESRLsDAETVA.SyfakcsvSLSVVCPKQLP
  244-  270 (50.94/28.68)	PQTQSPVKM.DRATVA.P.......SLPVTGQPPAP
  283-  308 (39.62/20.51)	PVSVGPVPT.ATVKVE.P.......S.TVTSMAPVP
  311-  335 (28.67/12.61)	PHIPS.VAR.P.ATQAiP.......SIQTSSASPA.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.43|      18|      19|     633|     651|       4
---------------------------------------------------------------------------
  633-  651 (27.59/25.97)	FLGQLQDKKlCAVIQL..PSQ
  653-  672 (26.84/19.13)	LLLSVSDKA.CRLIGMlfPGD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32244 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSHSATNLPQTQSPVKMDRATVAPSLPVTGQPPAPVTSANGPILNRQPVSVGPVPTATVKVEPSTV
2) NMISTGMATSLPPSQNAFSSGQQGTTSMASSGALMGSAQTGQSVGTNNAFSPQTTSNVASNLGVSQPMQGMNQGSHSGAQMMQGGISMNQNMMSGLGHGNVSSGTGGMMPTPGVAQQAQSVIQQLGGSNSSGPNMQLSQPSSGA
3) QQQIQQQQQQQHHQQQQMPQLQQQPQQQQLPQLQQQQQHQLSQLQHHQQQQQQQQQQQQQQHQLTQLQHHHQQQQQQTSPLNQMQQQTSPLNQMQQQQQPQQMVMGGQGFAQAPGRSQQGGSGQPNMPGAGFMG
4) SMAPVPSFPHIPSVARPATQAIPSIQTSSASPASQDMVTNAENAPDIKPVVVGGMTAPLRAGPPGGANVNLLNN
236
407
694
303
301
550
827
376










Molecular Recognition Features






MoRF SequenceStartStop




NANANA