<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32243

Description Uncharacterized protein (Fragment)
SequenceMGSEIGQEWREEIFQKIRSMNEVYAPYVNDVYQIATDVLHCQEPLPQQQRTENVESWQSFKKMVEELRQFLSVTKSSITPAFKKKLAFHEKMLKECINMYRKMQTRQQGELPQAQTVQDQSHDNQTNLQMQSMNMHVTGPRLQQSSNVLSSCPGVSAPQQNVPISIPASSCEYSITEFLNRQSLRKTVQQGQLPKSQNQHVQQRQSQTVQDQSHDNQKNPQIQSMSMQGAGPRAQQSKQGVVQSFAIGIAGISGSPILQELTSPDGNTMNPLTSTCGKSSATEPSIERLIRAVQSISSQALSSAVSDIISVVRMGDRIAGSFPGNVSTASVGEDLVAMSLLQERNFMTQEEMIATMKRKRQITAMPLSVASLGGSFGDRYKQFAGLIASDMQSSVTCGGKKASTEAEHTLLEEIKEINQRLIDTVVEICDDEDAADHSEGAISSKGCEGTTVKFSFISVSLSPALKAHLSSTHMSPIRPLRLLVPRSYPNGSPSLLDILPVETSKENEDLSSKVMARCNILLKKMSQPMSLKDIAKTWDSCVRDVICKYAQQFGGGTFSSKYGAWEKY
Length568
PositionTail
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.05
Grand average of hydropathy-0.464
Instability index63.99
Isoelectric point7.54
Molecular weight62764.50
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32243
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     256.13|      79|      91|      68|     157|       1
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   59-  150 (132.04/90.22)	SFKKMVEelRQF.LSVTKSSItpafkkklafhEKMLKECINMYRKMQTRQQGELP..........QAQTVQDQSHDNQTNLQMQSMNMHVTGPRLQQSSN..VLS
  151-  244 (124.09/67.84)	SCPGVSApqQNVpISIPASSC...........EYSITEFLNRQSLRKTVQQGQLPksqnqhvqqrQSQTVQDQSHDNQKNPQIQSMSMQGAGPRAQQSKQgvVQS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     367.79|     114|     119|     328|     445|       2
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  275-  323 (38.09/16.84)	.......................................................................TCG..KSSATEPSIERLIRAVQSIsSQALSSAVSD..IISVVRMGDRIAG..SFP
  328-  445 (172.66/119.33)	TaSVGEDLVAMSLLQE.RNFMTQEEMiATMKRKRQItaMPLSVASLGGSFGDRYKQFAGLIASDMQSSV..TCG..GKKASTEAEHTLLEEIKEI.NQRLIDTVVE..ICDDEDAADHSEGAISSK
  450-  561 (157.04/95.99)	T.TVKFSFISVSLSPAlKAHLSSTHM.SPIRPLRLL..VPRSYPNGSPSLLDILPVETSKENEDLSSKVmaRCNilLKKMSQPM......SLKDI..AKTWDSCVRdvIC..KYAQQFGGGTFSSK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32243 with Med15 domain of Kingdom Viridiplantae
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