<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32241

Description Uncharacterized protein
SequenceMVVMLTKEMSGGGPKVEEGQQFVAVAVKGLIGDKLGGAGSRRAVRWAVDNLLPKADRFVLVHVIPTITSIPTPTGERLPVEEVEERVVEMYVRDVKKGFEKVFVPFLKMCKSTSVTKSTTILRKHFSDSYPNQVLTVWLWDHSLQTYSPGKNYIARCLDRRTRGPGVPLTVLKYVPGTCEVYIVCKDRITTKSMDTLLIGEPCTSPSAASTNSHVFLRDWAASFHSVRSQTLPDPLHSTEAGTRRSASARELKLDALSLPDNRPQTTSTPTSKASSTTFQDILRRRGGSDIPQLNYSDFDETCTETQSNLENNVSEQRSSGSQPVTSRKSKKVEIETEVERLKKELQSTVVKYKQACEELSSTQSKVQMLSTECSKEARLVNNAVEKEALQRKTAALEKERHMKAVKEVEAAKALLAREFCQRQIAEVNALKTYLEKKKVIDQLLGLDHRYRKYTIEEIVTATEGFSQKKVIGEGGYGKVYRCSLDSTPAAVKVVRLDTPEKKQEFLKEVEVLSQLRHPHVVLLLGACPENGCLVYEYLENGSLEEYIFHRKNKPPLPWFIRFRVIFEVACGLAFLHSSKPEPIVHRDLKPGNILLNRNYVSKIADVGLAKLVTDVAPENVTMYRHSVLAGTLHYIDPEYHRTGTIRTKSDLYAFGITILQLLTARQPNGLVPAVENAVKKGTLTDMLDKSVTDWPLAETEELARIGLKCAEFRCRDRPDLESEVIPVLKRLLETASSKIKKEGSNLRAPSHYFCPIIREIMEEPEIAADGFTYEKKAILAWLEKHNISPVTRQKLDHFKLTPNHTLRSAIRDWKSRIRFSNDSV
Length825
PositionTail
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.07
Grand average of hydropathy-0.391
Instability index44.35
Isoelectric point9.07
Molecular weight92906.70
Publications
PubMed=23749190

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP32241
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     117.60|      31|      32|     201|     231|       1
---------------------------------------------------------------------------
  201-  231 (55.30/38.73)	EPCTSPSAAS..TNSHVFLRDWAASFHSVRSQT
  234-  266 (45.41/30.43)	DPLHSTEAGTrrSASARELKLDALSLPDNRPQT
  269-  285 (16.89/ 6.49)	TP.TSKASST..TFQDILRR.............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.60|      29|     170|     331|     359|       5
---------------------------------------------------------------------------
  331-  359 (47.41/28.61)	KKVEIETEVERLKKELQSTVVKYKQACEE
  502-  530 (50.19/30.68)	KKQEFLKEVEVLSQLRHPHVVLLLGACPE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.55|      27|      28|     425|     452|       6
---------------------------------------------------------------------------
  425-  452 (40.58/29.56)	IAEVNALKTYLEKKKVIDQlLGLDHRYR
  456-  482 (45.97/29.15)	IEEIVTATEGFSQKKVIGE.GGYGKVYR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32241 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QLNYSDFDETCTETQSNLENNVSEQRSSGSQPVTSRKSKKVE
2) TLPDPLHSTEAGTRRSASARELKLDALSLPDNRPQTTSTPTSKASSTTFQDILRRRG
293
231
334
287










Molecular Recognition Features






MoRF SequenceStartStop




1) IRDWKSRIRF
811
820