<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32236

Description Uncharacterized protein
SequenceMAVAPSDFQSTLWDSVTSLIRSAQEKNVDPLHWAIQLRLTLASSEISLPSPDIAQFLVSHIFWENHTPLSWKLLEKAISVNIVPPLLVLALLSPRVIANRKLHPAAYRLYMELIKRYAFSFMPQIRGPGYQKTMNSIDDILHLSETFGVQDQEPGSILLAFVFSIVWQLVDASLDEEGLLELTSSKRSKWQSRPHDMEIDGLDNPVKRNENHDVLEKANTEMAIELIQEFLQNKVTSRILHLASQNLPTHWEDFSQRFRVLATKSLTVRNSKHINPEALTQLAYHTRKFLARESKTIPRGEFHAIVSSGSKLALTSQHHGTSESALWLPIDLFFEDIMDGTQAAAASAVENLTGLVKALQAANSTTWHDAFLALWLAALRLVQRERDPIEGPVPRTDTFLCVLLSVTPLAVANIIEEEESQWIDQSSSSPSNQWKDKKGKCRQGLVNSLQQLGDYESLLTPPRSVQSVANQAAAKAVMFVSGSTNGNGSYEDTGMSESPSGCSGNMRHLIVEACITRNLLDTSAYLWPGFVTGGINQVPQGITGDISCWSLVMKGSPLTPSLTNSLITTPASSLAEIEKMYEVATTGSEDEKIAVASILCGASLFRGWSIQEHVIIFIVTLLSPPAPTDISGSYSHLISSAPFLNVLLVGISPIDCVQIFSLHGVVPLLAGALMPICEAFGSGIPNITWTLPTGEVISSHAVFSTAFSLLLRLWRFDHPPLDYVLGDVPPVGPQPSPEYLLLVRNCRLKCFGKSPKDRMARRRFSKMIDISVDPIFMDSFPRLKQWYRQHQECMASILSELKTGSPVHHIVDSLLSMMFKKANKGGSQSLTPSSGSSSLSTSGVDDSSDQLKLPAWDILEAAPFVLDAALTACAHGSLSPRELATGLKILADFLPATLGTMVSYFSSEVTRGLWKPVSMNGTDWPSPAANLVSVEQQIEKILAATGVDVPRLPADGISAATLPLPLAALVSLTITYKLDKATERFLVLVGPALDSLAAACPWPCMPIVTSLWTQKVKRWSDFLIFSASRTVFHHNSDAVIQLLRSCFTCTLGLTPTSQLCSYGGVGALLGHGFGSRYSGGISTAAPGILYIKVHRSIRDVMFLTEEILSLLMFSVKSIATRDLPAEQAEKLKKTKDGSKYGIGQVSLSLAMTRVKLAASLGASLVWISGGLNLVQALIKETLPSWFISVHGGEEDDLGGMVPMLRGYALAYFAILSSAFAWGIDSSSPASKRRPRVLWLHLDFLVSALEGKISLGCDWATWQAYVTGFVSLMVQCTPAWVLEVDVEVIKRLSKSLRQWNEQDLALALLCAGGLGTMGAATELIVETCHQL
Length1330
PositionTail
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.08
Grand average of hydropathy0.117
Instability index47.74
Isoelectric point6.17
Molecular weight145202.67
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32236
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     190.99|      63|      93|     264|     331|       1
---------------------------------------------------------------------------
  264-  331 (92.48/69.48)	KSLTVRNSKHINpEALTQLAYHTRKFLARESKTI....PRGE.FHAIVSSGSKLALTSQHHgtSESALWlpID
  357-  424 (98.51/57.25)	KALQAANSTTWH.DAFLALWLAALRLVQRERDPIegpvPRTDtFLCVLLSVTPLAVANIIE..EEESQW..ID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.59|      30|      93|    1159|    1189|       2
---------------------------------------------------------------------------
 1159- 1189 (47.64/33.00)	SLGAS.LVWISGGLNLVQALIKETlPSWFISV
 1253- 1283 (51.95/31.77)	SLGCDwATWQAYVTGFVSLMVQCT.PAWVLEV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     190.88|      62|      71|     718|     786|       8
---------------------------------------------------------------------------
  718-  786 (104.34/78.37)	HPP.LDYVLGDVPPVGP.QPSPEYLLlvrNCRLKCFGKSPKDRMARRRFSKMIDIS.VDpifmDSFPRLK..QW
  790-  856 (86.54/50.08)	HQEcMASILSELKTGSPvHHIVDSLL...SMMFKKANKGGSQSLTPSSGSSSLSTSgVD....DSSDQLKlpAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.54|      13|      22|     167|     179|      16
---------------------------------------------------------------------------
  167-  179 (22.65/12.29)	WQLVDASLDEEGL
  190-  202 (25.89/15.07)	WQSRPHDMEIDGL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32236 with Med33 domain of Kingdom Viridiplantae
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