<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32233

Description Uncharacterized protein
SequenceMEENTNWKPNELGGASAANNSNDWRSHLDSGFRKSVLSKLVNKLKEHFPLKREDMIREVASKVEEKAYNTAIDKAEYVRKLAGKMHAIEHLHKTGQLGSSVPRANTSGPAMNQVQPTPTSLPYTQTPTIQNWLPQNAQSNLNIPGSSHLPTQVPIATSMVQNINREMQGRQQHRPQQQQMNQHLLKEKVGHGNMQPQQMQQPQQQQYHPQSLLKKQPVQQSLTQLSSDQQNSQMLPRYQFQTQPVRSSPQQQMVQPSQEHSPLMNVPNTQQNHPTQRQHMVEQRAFRVSSSPQNNIASFQERPQRQHQSGNFKAAGSSLLATQGHQEVGKSQPIMSQQYRPAASVVVPSQRQHQPSNFNTPGSSFLATPVQEVGQSQPMMSQHYRPNMQQQKTQKRSSQQYLDSSQMFQAAASSLNQTQNIANQQIHPNQSQRAPLANPSTSQDSVNATGDWQEETYQKIKAMKEKYLPILITIHSKIMQKLRQIESLPPEKMGDEPIPKIKAFKSSIEHVMVFLNVTKNSVTEKHRDKFDLYEEHILKLTKNHTIIRKSMQQQQQGQFTTQSAQVNMSQSLEKDQMKSQLMSSNQIGASPSVSGPRLTSQTALLQTRQKLEPRDESKIVASSGNVMLHSKTNPVQSSMFLPRQQKQTHHRQTQQPQSRRQQQQQQQPQQENQKLQIPSSHEMNDVRMSQGVNIKTELLQQHVSLSQHQLTKGISNVSPSAQIQYNSSPQLVDKTKASSKSCGSPFVSQSAIPGDSENPISVESPVSHAESLDCSVKLGTHDEPPFKILPEQPIDRLIRAFKTRSPRSLEQSVNEMGSIMGMVDRMAGSFHPDGGSRAGLGEDLSFETRNFTTDEQEEYPSKRFKRLISADPQDMAPETDWYNQFSSLESEFDFAVASGPKANENEPGSALLQEIKEINRRLIETVVEICDEDTLGTIVTCSYVPVALSAQFKDHYNSGKISQIQPLRLLVLGDYPYSSPIILEEFSLDTSVHSYEDLSARTRSRFSFSLKELSDPNPISLEDIAQMWNDSSRATMIEYAERHGGGTFSSKYGAWETVLRAS
Length1062
PositionTail
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.05
Grand average of hydropathy-0.865
Instability index63.41
Isoelectric point8.98
Molecular weight119708.53
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32233
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     410.52|      44|      44|     298|     341|       1
---------------------------------------------------------------------------
   92-  135 (30.07/ 7.44)	..H..KTGQL.....GSSVpRANT..SGPAMNQVQPT..pTS..LPYtqT............P.....TIQNwLP.Q
  136-  176 (42.85/13.76)	.NA..QS.NL..NIPGSSH.LPTQ..VPIATSMVQNInreMQgrQ.........................QH.RP.Q
  177-  218 (49.27/16.94)	QQQ..MNQHLlkEKVGHGN.MQPQ..QMQ.....QP....QQ..QQY..H............P...qsLLKK.QP.V
  219-  250 (37.04/10.89)	QQ...............SL...TQ..LSSDQQNSQML...PR..YQF..Q............T....qPVRS.SP.Q
  251-  276 (31.22/ 8.01)	QQ..................M.VQ..PSQE...HSPL...MN.......V............P.....NTQQnHPtQ
  305-  350 (70.36/27.38)	RQH..QSGNF..KAAGSSL.LATQ..GHQEVGKSQPI...MS..QQY..R............P...aaSVVV.PS.Q
  351-  398 (67.85/26.14)	RQH..QPSNF..NTPGSSF.LATP..V.QEVGQSQPM...MS..QHY..R............PnmqqqKTQK.RS.S
  399-  440 (39.30/12.01)	QQYldSSQMF..QAAASSL.NQTQniANQQIHPNQ......S..QR...A............P...laN.....P.S
  552-  597 (42.55/13.62)	QQQ..QQGQF...........TTQ..SAQ.VNMSQSL...EK..DQM..KsqlmssnqigasP.....SV.S.GP.R
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     268.34|      64|     190|     742|     807|       2
---------------------------------------------------------------------------
  677-  725 (38.73/15.87)	................................I.PSSHEmNDVRMSQGVNiKTEL.LQQHVSLS...QHQltKGISNVSPS.AQIQY
  726-  796 (90.56/47.96)	......NSSPQlvdktkassksCGSPFVSQSAI.PGDSE.NPISVESPVS.HAES.LDCSVKLG...THD..EPPFKILPE.QPIDR
  797-  866 (83.73/49.68)	LIRAfkTRSPR...sleqsvneMGSIMGMVDRM.AG.SF.HP.DGGSRAG.LGED.LSFETRNF...TTD..EQ..EEYPS.KRFKR
  867-  920 (55.32/26.64)	LISA.............................dPQDMA.PETDWYNQFS.SLESeFDFAVASGpkaNEN..EPGSALLQEiKEINR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.20|      24|     114|     496|     522|       3
---------------------------------------------------------------------------
  455-  478 (37.43/26.84)	ETYQKIKAMK...EKYLPILITIHSKI
  496-  522 (35.33/34.18)	EPIPKIKAFKssiEHVMVFLNVTKNSV
  525-  543 (25.45/15.83)	KHRDKFDLYE...EHI...LKLTKN..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.46|      18|      20|     629|     646|       4
---------------------------------------------------------------------------
  629-  646 (32.32/15.26)	HSKTNPVQSSMFLPRQQK
  650-  667 (33.14/15.86)	HRQTQQPQSRRQQQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.84|      19|      20|      43|      62|       5
---------------------------------------------------------------------------
   43-   62 (27.06/25.17)	KlKEHFPLKREDMIREVASK
   66-   84 (28.77/21.02)	K.AYNTAIDKAEYVRKLAGK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32233 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASSLNQTQNIANQQIHPNQSQRAPLANPSTSQDSVNATGDWQEE
2) GKMHAIEHLHKTGQLGSSVPRANTSGPAMNQVQPTPTSLPYTQTPTIQNWLPQNAQSNLNIPGSSHLPTQVPIATSMVQNINREMQGRQQHRPQQQQMNQHLLKEKVGHGNMQPQQMQQPQQQQYHPQSLLKKQPVQQSLTQLSSDQQNSQMLPRYQFQTQPVRSSPQQQMVQPSQEHSPLMNVPNTQQNHPTQRQHMVEQRAFRVSSSPQNNIASFQERPQRQHQSGNFKAAGSSLLATQGHQEVGKSQPIMSQQYRPAASVVVPSQRQHQPSNFNTPGSSFLATPVQEVGQSQPMMSQHYRPNMQQQKTQKRSSQQYLDSSQMFQA
3) HTIIRKSMQQQQQGQFTTQSAQVNMSQSLEKDQMKSQLMSSNQIGASPSVSGPRLTSQTALLQTRQKLEPRDESKIVASSGNVMLHSKTNPVQSSMFLPRQQKQTHHRQTQQPQSRRQQQQQQQPQQENQKLQIPSSHEMNDVRMSQGVNIKTELLQQHVSLSQHQLTKGISNVSPSAQIQYNSSPQLVDKTKASSKSCGSPFVSQSAIPGDSENPISVESPVSHA
4) MGMVDRMAGSFHPDGGSRAGLGEDLSFETRNFTTDE
412
83
544
820
455
410
769
855










Molecular Recognition Features






MoRF SequenceStartStop




1) KRFKRLI
862
868