<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32231

Description Uncharacterized protein
SequenceMQGDNTTAPPYTTTASTGQGISVRPPPSGPVLATASSVSPRSQSELKEQSSMSSANTGFVSQSVPSSVPAQWSSNAAASSNVNPITQASPMLQIPPFGRPGPFAPPGLMTSPPAFPGSNPFSTTPRPGMSAGPAQINPGIHPHMYPPYHSHHNVPGMPQGMWLQPPPMGGIPRAPFLSHPTPFPGSYPFPVRGVSPNLPYSVSQPLGAIPLGTVGNVHALPGHQLDISPAQKTEALSGIDDRAGTQPVGNRLDAWTAHKSETGVVYYYNSVTGQSTYEKPPGFGGEPDKVSVQPIPVSMENLPGTDWALVSTNDGKKYYYNNKTKVSSWQIPAEVKDLVKKPEERAMESLASVPSSDLTEKGSDQLSLSAPAISNGGRDAASLKTSNFGSSALDLVKKKLHDSGVPVSSTTTSEANGGKSIETPCGESGNGTGKVKDAPEAGNLSDSSSDSEDEDSGPSKEECFKQFKEMLKERGIAPFSKWEKELPKIIFDPRFKAIPSHSVRRSLFEQYVKTRAEEERREKRAAHKAAIEGFRQLLDEASTDIDQHTDYRAFKKKWGSDLRFEALDRKERETLLNERVLSLKRAAQQKAQEIRAAAASDFKSMLREREVPINLQWSKVKDSLRNEPRYRSVAHEDREVFYNEYIAELKDAQRGDDHEMKARDEEDKLREREREMRKRKEREVQEVERVRQKIRRKEASSSYQALLVEKIRDPEASWTESKPKLERDPQKRASNPDLDPADKEKLFRDHVKTLYERCVHDFKALLAEALSSETTSQQTEDGKTVLNSWSTAKQVLKPDIRYSKMPRNDREVLWRRYTEDILRKQKQDNYQEEKQKDYKT
Length840
PositionUnknown
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.07
Grand average of hydropathy-0.881
Instability index49.90
Isoelectric point8.58
Molecular weight93389.24
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32231
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.78|      46|      50|     231|     280|       1
---------------------------------------------------------------------------
  231-  280 (76.83/49.01)	QkteaLSGIDDRAGTQPVGNRLDA.....WTAHKSETGVVYYYNSVTGQSTYEKP
  282-  332 (78.95/42.83)	G....FGGEPDKVSVQPIPVSMENlpgtdWALVSTNDGKKYYYNNKTKVSSWQIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     153.70|      19|      19|      90|     108|       2
---------------------------------------------------------------------------
   90-  101 (21.32/ 6.46)	.............PM.LQIP.PFGRPG
  102-  117 (33.48/14.35)	PFA..P.PGL....M.TSPP.AF..PG
  120-  143 (23.01/ 7.56)	PFSttPrPGMsagPA..QIN.PGIHPH
  155-  170 (29.06/11.48)	PGM..P.QGM.....wLQPP.PMG..G
  172-  185 (24.23/ 8.35)	PRA..P........F.LSHPtPF..PG
  188-  204 (22.60/ 7.30)	PFP..V.RGV..sPN.L....PYSVSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.98|      26|      26|     362|     387|       3
---------------------------------------------------------------------------
  352-  381 (35.03/16.36)	SVPSSDltekGSDQLSLSAPAISNGGRDAA
  382-  408 (34.13/15.78)	SLKTSN...fGSSALDLVKKKLHDSGVPVS
  409-  433 (33.82/15.58)	STTTSE...aNGGK.SIETPC.GESGNGTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     302.54|      58|      58|     668|     725|       4
---------------------------------------------------------------------------
  482-  548 (59.15/31.02)	WEKELPKI...ifdPRF.K.AIPSH...SVRRslfeqyvktRAEEERR.......EKRAA..H..KAAIEGFRQLLDEASTDIDQH
  549-  612 (57.32/29.83)	TDYRAFKKKWG...SDL.RfEALDR...KERE.........TLLNERVlslkraaQQKAQeiR..AAAASDFKSML....REREVP
  668-  717 (69.10/37.47)	........KLR...ERE.R.EMRKR...KERE.........VQEVERV.......RQKIR..R..KEASSSYQALLVEKIRDPEAS
  718-  776 (52.21/26.51)	WTESKPKL.........eR.DPQKRasnPDLD.........PADKEKL......fRDHVK..TlyERCVHDFKALLAEALSSETTS
  789-  837 (64.76/34.66)	WSTAKQVLKPD...IRY.S.KM.PR...NDRE.........VL.WRRY.......TEDIL..R..KQKQDNYQE...EKQKD....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.24|      15|      38|      15|      30|       5
---------------------------------------------------------------------------
   15-   30 (23.38/13.63)	ASTGqGISVRPPPSGP
   55-   69 (24.86/10.17)	ANTG.FVSQSVPSSVP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32231 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AQRGDDHEMKARDEEDKLREREREMRKRKEREVQEVERVRQKIR
2) HALPGHQLDISPAQKTEALSGIDDRAGTQPVGNRLDAW
3) IPAEVKDLVKKPEERAMESLASVPSSDLTEKGSDQLSLSAPAISNGGRDAASLKT
4) KLHDSGVPVSSTTTSEANGGKSIETPCGESGNGTGKVKDAPEAGNLSDSSSDSEDEDSGPSKEECF
5) MQGDNTTAPPYTTTASTGQGISVRPPPSGPVLATASSVSPRSQSELKEQSSMSSANTGFVSQSVPSSVPAQWSSNAAASSNVNPITQASPMLQIPPFGRPGPFAPPGLMTSPPAFPGSNPFSTTPRPGMSAGPAQINPGIHPHMYPPYHSHHNVPGMPQGMWLQPPPMGGIPRAPFL
6) SWTESKPKLERDPQKRASNPDLDPADKEKL
652
218
331
399
1
717
695
255
385
464
177
746










Molecular Recognition Features






MoRF SequenceStartStop




1) LPKIIFDPRF
2) VLKPDIRY
486
795
495
802