<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP32228

Description Uncharacterized protein (Fragment)
SequenceMARHYSSDDGHGHGHGQSPVNSTVVAIDKDKNSHYAVRWAVDHLFNTITNPNLILVHVRLKNSNQTLVADGGNIDDSELKQLFVPYRGYCARKGITMMEVILDDTDVAKAVMDYVNNNLVTNLVLGSSSRSPFARSLKFTKSHDVPASVLKLTPEFCSIYVISKGKVHSSKTAQRTITNTLVPPRAPLSSFHLPDNDQDHLPARGQQSSTRNSTPERRSHDSSNGYKPVREMKKIPTSGSVDFSYDFRQARGQKNSSAKNSFTNEGDVGSLMMMGSIDLSNENFDIVAGVSASSDESVSQSTRDIEAEMKRLKIELKQTMDMYSSACKEALNAKKKANELNQWKVEEARRFEEARVSEEAALAVAEMEKAKCRAAMDAAEKAQRMAELEGQRRKQAEIKARRESQEKDRALSALVQNDVRYRRYSIEEIEEATERFANNKKIGEGGYGPVYHGTLDHTPVAIKVLRPDAAQGKRQFQQEVEVLSSIRHPHMVLLLGACPEYGCLVYEYMDNGSLEDRLFRRGNSPPLSWRKRFQIAAEIATALSFLHQAKPEPLVHRDLKPANILLDKNYVSKISDVGLARLVPASVANTVTQFHMTSAAGTFCYIDPEYQQTGKLTTKSDIYSLGIMLLQVITAKSPMGLAHQVSRAIDKGTFKDLLDPVVPDWPVEEATNFAKLCLKCAELRKRDRPDLGKEIVPELLRLRNLGMNNES
Length711
PositionTail
OrganismCapsella rubella
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Camelineae> Capsella.
Aromaticity0.06
Grand average of hydropathy-0.525
Instability index44.52
Isoelectric point8.68
Molecular weight79369.10
Publications
PubMed=23749190

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP32228
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     203.11|      66|     437|       8|      76|       1
---------------------------------------------------------------------------
    8-   76 (100.52/95.47)	DDGHG...HGH.GQSPVNSTVVAIDKDKNSHyAVRWAVDhLFNTITNPNLILVhVRLKNSNQTLV...ADGGNIDD
  444-  516 (102.59/79.50)	EGGYGpvyHGTlDHTPVAIKVLRPDAAQGKR.QFQQEVE.VLSSIRHPHMVLL.LGACPEYGCLVyeyMDNGSLED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.95|      39|      44|     321|     363|       2
---------------------------------------------------------------------------
  321-  359 (64.93/63.91)	DMYSSACKEALNAKKKANELNQWKVEEARRFE.EA.RVSEE
  366-  406 (55.02/41.73)	EMEKAKCRAAMDAAEKAQRMAELEGQRRKQAEiKArRESQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.40|      33|      46|     179|     213|       3
---------------------------------------------------------------------------
  179-  213 (57.12/39.17)	NTLVPPR....APLSSfhLPDNDQDHLPARGQQ.SSTRNS
  224-  261 (51.27/28.57)	NGYKPVRemkkIPTSG..SVDFSYDFRQARGQKnSSAKNS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP32228 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PPRAPLSSFHLPDNDQDHLPARGQQSSTRNSTPERRSHDSSNGYKPVREMK
183
233










Molecular Recognition Features






MoRF SequenceStartStop




NANANA